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Aliases for C18orf65 Gene

Aliases for C18orf65 Gene

  • Chromosome 18 Open Reading Frame 65 2 3 5

External Ids for C18orf65 Gene

Summaries for C18orf65 Gene

GeneCards Summary for C18orf65 Gene

C18orf65 (Chromosome 18 Open Reading Frame 65) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C18orf65 Gene

Genomics for C18orf65 Gene

Regulatory Elements for C18orf65 Gene

Enhancers for C18orf65 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18G076499 1.3 Ensembl ENCODE dbSUPER 0.7 +4.5 4520 1.7 TBP PKNOX1 TBL1XR1 BMI1 ZBTB40 RCOR1 RELB ETV6 IKZF2 CREM C18orf65 LINC00908
GH18G076502 1.3 FANTOM5 ENCODE dbSUPER 0.4 +7.2 7221 0.2 FOXA2 ATF1 CEBPG ZKSCAN1 TEAD3 NCOR1 CREM THAP11 GATAD2A TEAD1 C18orf65 LINC00908
GH18G076517 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +23.3 23347 2.1 SOX13 CTCF TAF1 MAX ZNF384 RBBP5 RAD21 ZBTB40 YY1 ZNF121 LINC00908 C18orf65
GH18G076524 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +30.0 29996 1.3 FOXA2 ZBTB48 ZNF600 PRDM10 ZBTB20 RFX1 RNF2 FOXA3 EP300 ATF2 LINC00908 C18orf65
GH18G076521 1.5 Ensembl ENCODE dbSUPER 0.3 +26.8 26757 1.6 HNRNPUL1 FOXA2 ATF1 MLX ARID4B SIN3A DMAP1 FEZF1 YY1 SLC30A9 LINC00908 C18orf65
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C18orf65 on UCSC Golden Path with GeneCards custom track

Genomic Location for C18orf65 Gene

Chromosome:
18
Start:
76,495,521 bp from pter
End:
76,498,088 bp from pter
Size:
2,568 bases
Orientation:
Plus strand

Genomic View for C18orf65 Gene

Genes around C18orf65 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C18orf65 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C18orf65 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C18orf65 Gene

Proteins for C18orf65 Gene

  • Protein details for C18orf65 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZTR6-CR065_HUMAN
    Recommended name:
    Putative uncharacterized protein C18orf65
    Protein Accession:
    Q6ZTR6

    Protein attributes for C18orf65 Gene

    Size:
    163 amino acids
    Molecular mass:
    17236 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C18orf65 Gene

Post-translational modifications for C18orf65 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C18orf65 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for C18orf65 Gene

Domains & Families for C18orf65 Gene

Protein Domains for C18orf65 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C18orf65: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C18orf65 Gene

Function for C18orf65 Gene

Phenotypes for C18orf65 Gene

genes like me logo Genes that share phenotypes with C18orf65: view

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C18orf65 Gene

Localization for C18orf65 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C18orf65 Gene

Pathways & Interactions for C18orf65 Gene

SuperPathways for C18orf65 Gene

No Data Available

Interacting Proteins for C18orf65 Gene

Gene Ontology (GO) - Biological Process for C18orf65 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C18orf65 Gene

Drugs & Compounds for C18orf65 Gene

No Compound Related Data Available

Transcripts for C18orf65 Gene

mRNA/cDNA for C18orf65 Gene

(1) REFSEQ mRNAs :
(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for C18orf65 Gene

No ASD Table

Relevant External Links for C18orf65 Gene

GeneLoc Exon Structure for
C18orf65
ECgene alternative splicing isoforms for
C18orf65

Expression for C18orf65 Gene

NURSA nuclear receptor signaling pathways regulating expression of C18orf65 Gene:

C18orf65
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C18orf65 Gene

Orthologs for C18orf65 Gene

Evolution for C18orf65 Gene

ENSEMBL:
Gene Tree for C18orf65 (if available)
TreeFam:
Gene Tree for C18orf65 (if available)

No data available for Orthologs for C18orf65 Gene

Paralogs for C18orf65 Gene

No data available for Paralogs for C18orf65 Gene

Variants for C18orf65 Gene

Sequence variations from dbSNP and Humsavar for C18orf65 Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
rs1000357727 -- 76,496,175(+) GGGGG(A/G)GGGGC intron-variant, upstream-variant-2KB
rs1000370197 -- 76,494,055(+) TGAGG(C/T)TGACT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1000476665 -- 76,493,704(+) CTCCA(A/C/G)TTTCT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000729592 -- 76,495,391(+) GGGGG(C/G)CTGCG upstream-variant-2KB
rs1001489022 -- 76,495,908(+) AGGTC(A/C)CGCTG intron-variant, upstream-variant-2KB

Relevant External Links for C18orf65 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C18orf65

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for C18orf65 Gene

Disorders for C18orf65 Gene

Relevant External Links for C18orf65

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C18orf65

No disorders were found for C18orf65 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C18orf65 Gene

Publications for C18orf65 Gene

  1. DNA sequence and analysis of human chromosome 18. (PMID: 16177791) Nusbaum C. … Lander E.S. (Nature 2005) 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 64

Products for C18orf65 Gene

Sources for C18orf65 Gene

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