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Aliases for C18orf61 Gene

Subcategory (RNA class) for C18orf61 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for C18orf61 Gene

  • Uncharacterized LOC497259 3

External Ids for C18orf61 Gene

Previous GeneCards Identifiers for C18orf61 Gene

  • GC18U900216
  • GC18P012202
  • GC18P012204
  • GC18P012267
  • GC18P012337

Summaries for C18orf61 Gene

GeneCards Summary for C18orf61 Gene

C18orf61 (Uncharacterized LOC497259) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C18orf61 Gene

Genomics for C18orf61 Gene

Regulatory Elements for C18orf61 Gene

Enhancers for C18orf61 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18G012200 0.7 ENCODE 0.7 -0.3 -303 0.1 FOSL1 EED RELB IKZF2 CREM SMARCE1 MTA2 RNF2 NRF1 ELF4 ENSG00000267643 C18orf61 ENSG00000279285
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C18orf61 on UCSC Golden Path with GeneCards custom track

Genomic Location for C18orf61 Gene

Chromosome:
18
Start:
12,200,779 bp from pter
End:
12,224,711 bp from pter
Size:
23,933 bases
Orientation:
Plus strand

Genomic View for C18orf61 Gene

Genes around C18orf61 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C18orf61 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C18orf61 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C18orf61 Gene

Proteins for C18orf61 Gene

Post-translational modifications for C18orf61 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C18orf61 Gene

Domains & Families for C18orf61 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C18orf61 Gene

Function for C18orf61 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C18orf61 Gene

Localization for C18orf61 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C18orf61 Gene

Pathways & Interactions for C18orf61 Gene

SuperPathways for C18orf61 Gene

No Data Available

Interacting Proteins for C18orf61 Gene

Gene Ontology (GO) - Biological Process for C18orf61 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C18orf61 Gene

Drugs & Compounds for C18orf61 Gene

No Compound Related Data Available

Transcripts for C18orf61 Gene

mRNA/cDNA for C18orf61 Gene

(1) Additional mRNA sequences :

Unigene Clusters for C18orf61 Gene

Uncharacterized LOC497259:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C18orf61 Gene

No ASD Table

Relevant External Links for C18orf61 Gene

GeneLoc Exon Structure for
C18orf61

Expression for C18orf61 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C18orf61 Gene

mRNA differential expression in normal tissues according to GTEx for C18orf61 Gene

This gene is overexpressed in Pancreas (x21.3) and Testis (x19.5).

SOURCE GeneReport for Unigene cluster for C18orf61 Gene:

Hs.451609
genes like me logo Genes that share expression patterns with C18orf61: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C18orf61 Gene

Orthologs for C18orf61 Gene

No data available for Orthologs and Evolution for C18orf61 Gene

Paralogs for C18orf61 Gene

No data available for Paralogs for C18orf61 Gene

Variants for C18orf61 Gene

Sequence variations from dbSNP and Humsavar for C18orf61 Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
rs1000409932 -- 12,206,916(+) TTGGA(A/G)TTGCT intron-variant
rs1000865569 -- 12,204,747(+) ATTAC(A/G)TTTAT intron-variant
rs1001146787 -- 12,209,014(+) ATTTT(C/T)CCCAG intron-variant
rs1001650974 -- 12,213,195(+) AAAAA(C/T)TGAAA intron-variant
rs1001735379 -- 12,213,484(+) TCTCC(A/G)AATGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C18orf61 Gene

Variant ID Type Subtype PubMed ID
dgv974e212 CNV loss 25503493
esv3582976 CNV loss 25503493
esv3641829 CNV gain 21293372
esv3641830 CNV loss 21293372
nsv1055343 CNV gain 25217958
nsv1063125 CNV loss 25217958
nsv1129331 OTHER inversion 24896259
nsv1146564 CNV duplication 26484159
nsv1153637 OTHER inversion 26484159
nsv507861 OTHER sequence alteration 20534489
nsv960252 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for C18orf61 Gene

Disorders for C18orf61 Gene

Relevant External Links for C18orf61

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C18orf61

No disorders were found for C18orf61 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C18orf61 Gene

Publications for C18orf61 Gene

No publications were found for C18orf61 Gene.

Products for C18orf61 Gene

Sources for C18orf61 Gene

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