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C18orf32 Gene

protein-coding   GIFtS: 44
GCID: GC18M047008

Chromosome 18 Open Reading Frame 32

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Chromosome 18 Open Reading Frame 321 2
Putative NF-Kappa-B-Activating Protein 2002 3
Putative NFkB Activating Protein2
UPF0729 Protein C18orf322

External Ids:    HGNC: 316901   Entrez Gene: 4976612   Ensembl: ENSG000001775767   UniProtKB: Q8TCD13   

Export aliases for C18orf32 gene to outside databases

Previous GC identifers: GC18M045264 GC18M043861


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for C18orf32 Gene:
C18orf32 (chromosome 18 open reading frame 32) is a protein-coding gene. GO annotations related to this gene include signal transducer activity.

UniProtKB/Swiss-Prot: CR032_HUMAN, Q8TCD1
Function: May activate the NF-kappa-B signaling pathway




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000018.9  NC_018929.2  NT_010966.15  
Regulatory elements:
   Regulatory transcription factor binding sites in the C18orf32 gene promoter:
         POU2F2 (Oct-2.1)   Oct-B1   oct-B3   oct-B2   POU2F2   CREB   POU2F1   deltaCREB   POU2F1a   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidC18orf32 promoter sequence
   Search Chromatin IP Primers for C18orf32

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat C18orf32


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 18q21.1   Ensembl cytogenetic band:  18q21.1   HGNC cytogenetic band: 18q21.1

C18orf32 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
C18orf32 gene location

GeneLoc information about chromosome 18         GeneLoc Exon Structure

GeneLoc location for GC18M047008:  view genomic region     (about GC identifiers)

Start:
47,007,548 bp from pter      End:
47,013,644 bp from pter
Size:
6,097 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: CR032_HUMAN, Q8TCD1 (See protein sequence)
Recommended Name: UPF0729 protein C18orf32  
Size: 76 amino acids; 8669 Da

Explore the universe of human proteins at neXtProt for C18orf32: NX_Q8TCD1

Explore proteomics data for C18orf32 at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys38, Lys39
  • Modification sites at PhosphoSitePlus

  • See C18orf32 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (2 alternative transcripts): 
    NP_001030177.1  NP_001186275.1  

    ENSEMBL proteins: 
     ENSP00000464411   ENSP00000323199   ENSP00000462538  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR026776 UPF0729

    Graphical View of Domain Structure for InterPro Entry Q8TCD1

    ProtoNet protein and cluster: Q8TCD1

    UniProtKB/Swiss-Prot: CR032_HUMAN, Q8TCD1
    Similarity: Belongs to the UPF0729 family


    Find genes that share domains with C18orf32           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: CR032_HUMAN, Q8TCD1
    Function: May activate the NF-kappa-B signaling pathway

         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004871signal transducer activity IMP12761501
         
    Find genes that share ontologies with C18orf32           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for C18orf32:
     Increased G1 DNA content 

    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for C18orf32
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    8 qRT-PCR Assays for microRNAs that regulate C18orf32:
    hsa-miR-374c hsa-miR-122 hsa-miR-655 hsa-miR-934 hsa-miR-3920 hsa-miR-3919 hsa-miR-138-2* hsa-miR-452
    SwitchGear 3'UTR luciferase reporter plasmidC18orf32 3' UTR sequence
    Inhib. RNA
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    extracellular3
    nucleus1
    plasma membrane1

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for C18orf32
    Interactions:

        Search GeneGlobe Interaction Network for C18orf32

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    Selected Interacting proteins for C18orf32 (Q8TCD13 ENSP000003231994) via UniProtKB, MINT, STRING, and/or I2D (see all 35)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    MAP1LC3AQ9H4923I2D: score=2 
    AMBRA1Q9C0C73I2D: score=1 
    ATG13O751433I2D: score=1 
    ATG14Q6ZNE53I2D: score=1 
    CAMKK2Q96RR43I2D: score=1 
    About this table

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007165signal transduction IMP12761501
    GO:0043123positive regulation of I-kappaB kinase/NF-kappaB signaling IMP12761501

    Find genes that share ontologies with C18orf32           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for C18orf32 (CR032)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for C18orf32 gene (2 alternative transcripts): 
    NM_001035005.3  NM_001199346.1  

    Unigene Cluster for C18orf32:

    Chromosome 18 open reading frame 32
    Hs.603040  [show with all ESTs]
    Unigene Representative Sequence: NM_001199356
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000579820(uc002ldl.3) ENST00000318240(uc002ldk.2) ENST00000582392

    miRNA
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    8 qRT-PCR Assays for microRNAs that regulate C18orf32:
    hsa-miR-374c hsa-miR-122 hsa-miR-655 hsa-miR-934 hsa-miR-3920 hsa-miR-3919 hsa-miR-138-2* hsa-miR-452
    SwitchGear 3'UTR luciferase reporter plasmidC18orf32 3' UTR sequence
    Inhib. RNA
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      QuantiTect SYBR Green Assays in human, mouse, rat C18orf32
      QuantiFast Probe-based Assays in human, mouse, rat C18orf32

    Additional mRNA sequence: 

    AB097012.1 AK027111.1 AK291882.1 BC022357.1 BC093004.1 

    21 DOTS entries:

    DT.100891790  DT.95182723  DT.452028  DT.121105090  DT.100891783  DT.121104983  DT.95182721  DT.100891774 
    DT.95182728  DT.75196436  DT.100809496  DT.121105078  DT.121105088  DT.121105135  DT.95182730  DT.97765301 
    DT.100035658  DT.100891762  DT.121105133  DT.91832582  DT.92471784 

    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for C18orf32    About this scheme

    ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c
    SP1:              -     -     -                           
    SP2:                    -     -                           
    SP3:                          -                           
    SP4:                                                      


    ECgene alternative splicing isoforms for C18orf32

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    C18orf32 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AATGGATTAC
    C18orf32 Expression
    About this image


    C18orf32 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 12) fully expand
     
     Brain (Nervous System)
             Cerebral Cortex
     
     Colon (Gastrointestinal Tract)
     
     Kidney (Urinary System)
     
     Uterus (Reproductive System)
     
     Thyroid (Endocrine System)
    C18orf32 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    C18orf32 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.603040
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for C18orf32 gene from Selected species (see all 10)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia BC0311811 , 5 cDNA sequence BC0311811, 5 81.94(n)1
    80.56(a)1
      18 (50.96 cM)5
    4078191  NM_001001181.31  NP_001001181.11 
     750059005 
    chicken
    (Gallus gallus)
    Aves C18orf326
    chromosome 18 open reading frame 32
    58(a)
    1 ↔ 1
    Z(1083660-1084565)
    lizard
    (Anolis carolinensis)
    Reptilia C18orf326
    chromosome 18 open reading frame 32
    48(a)
    1 ↔ 1
    2(187262-191441)


    ENSEMBL Gene Tree for C18orf32 (if available)
    TreeFam Gene Tree for C18orf32 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for C18orf32 gene

    Find genes that share paralogs with C18orf32           About GenesLikeMe


    5 Pseudogenes.org Pseudogenes for C18orf32
    PGOHUM00000248886 PGOHUM00000245118 PGOHUM00000240961 PGOHUM00000241082 PGOHUM00000237737


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    1 SNPs for C18orf32    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 18 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs115376261,2,4
    ----see VAR_0393742 mis40--------

    HapMap Linkage Disequilibrium report for C18orf32 (47007548 - 47013644 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for C18orf32:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv2295CNV Insertion18451855
    nsv2294CNV Loss18451855

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing C18orf32
    DNA2.0 Custom Variant and Variant Library Synthesis for C18orf32

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for C18orf32 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with C18orf32)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Large-scale identification and characterization of human genes that activate NF-kappaB and MAPK signaling pathways. (PubMed id 12761501)1, 2 Matsuda A....Sugano S. (Oncogene 2003)
    2. The identification of novel proteins that interact with the GLP-1 receptor and restrain its activity. (PubMed id 23864651)1 Huang X....Wheeler M.B. (Mol. Endocrinol. 2013)
    3. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (Nat. Cell Biol. 2012)
    4. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (amp 2011)
    5. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (amp 2011)
    6. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    7. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (Nat. Genet. 2004)
    8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    9. Normalization and subtraction: two approaches to facilitate gene discovery. (PubMed id 8889548)1 Bonaldo M.F.... Soares M.B. (Genome Res. 1996)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 497661 HGNC: 31690 Ensembl:ENSG00000177576 euGenes: HUgn497661 ECgene: C18orf32
    H-InvDB: C18orf32

    (According to HUGE)
    About This Section

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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for C18orf32 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for C18orf32 gene:
    Search GeneIP for patents involving C18orf32

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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