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Aliases for C17orf98 Gene

Aliases for C17orf98 Gene

  • Chromosome 17 Open Reading Frame 98 2 3 5

External Ids for C17orf98 Gene

Previous GeneCards Identifiers for C17orf98 Gene

  • GC17M034245
  • GC17M036991
  • GC17M032786
  • GC17M038835
  • GC17M038834

Summaries for C17orf98 Gene

GeneCards Summary for C17orf98 Gene

C17orf98 (Chromosome 17 Open Reading Frame 98) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C17orf98 Gene

Genomics for C17orf98 Gene

Regulatory Elements for C17orf98 Gene

Enhancers for C17orf98 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around C17orf98 on UCSC Golden Path with GeneCards custom track

Promoters for C17orf98 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around C17orf98 on UCSC Golden Path with GeneCards custom track

Genomic Location for C17orf98 Gene

Chromosome:
17
Start:
38,825,392 bp from pter
End:
38,841,500 bp from pter
Size:
16,109 bases
Orientation:
Minus strand

Genomic View for C17orf98 Gene

Genes around C17orf98 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C17orf98 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C17orf98 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C17orf98 Gene

Proteins for C17orf98 Gene

  • Protein details for C17orf98 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MV24-CQ098_HUMAN
    Recommended name:
    Uncharacterized protein C17orf98
    Protein Accession:
    A8MV24

    Protein attributes for C17orf98 Gene

    Size:
    154 amino acids
    Molecular mass:
    17565 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C17orf98 Gene

Proteomics data for C17orf98 Gene at MOPED

Post-translational modifications for C17orf98 Gene

No Post-translational modifications

Other Protein References for C17orf98 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C17orf98 Gene

Domains & Families for C17orf98 Gene

Protein Domains for C17orf98 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C17orf98: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C17orf98 Gene

Function for C17orf98 Gene

Phenotypes for C17orf98 Gene

genes like me logo Genes that share phenotypes with C17orf98: view

Animal Model Products

CRISPR Products

miRNA for C17orf98 Gene

miRTarBase miRNAs that target C17orf98

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C17orf98 Gene

Localization for C17orf98 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C17orf98 Gene COMPARTMENTS Subcellular localization image for C17orf98 gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C17orf98 Gene

Pathways & Interactions for C17orf98 Gene

SuperPathways for C17orf98 Gene

No Data Available

Interacting Proteins for C17orf98 Gene

Gene Ontology (GO) - Biological Process for C17orf98 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C17orf98 Gene

Drugs & Compounds for C17orf98 Gene

No Compound Related Data Available

Transcripts for C17orf98 Gene

mRNA/cDNA for C17orf98 Gene

(3) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C17orf98 Gene

Chromosome 17 open reading frame 98:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C17orf98 Gene

No ASD Table

Relevant External Links for C17orf98 Gene

GeneLoc Exon Structure for
C17orf98
ECgene alternative splicing isoforms for
C17orf98

Expression for C17orf98 Gene

mRNA expression in normal human tissues for C17orf98 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C17orf98 Gene

This gene is overexpressed in Testis (x48.3).

SOURCE GeneReport for Unigene cluster for C17orf98 Gene Hs.250182

genes like me logo Genes that share expression patterns with C17orf98: view

Primer Products

No data available for Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for C17orf98 Gene

Orthologs for C17orf98 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C17orf98 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C19H17orf98 35
  • 83.55 (n)
  • 81.82 (a)
dog
(Canis familiaris)
Mammalia C9H17orf98 35
  • 83.98 (n)
  • 83.77 (a)
mouse
(Mus musculus)
Mammalia 1700001P01Rik 35
  • 75.32 (n)
  • 77.27 (a)
1700001P01Rik 16
chimpanzee
(Pan troglodytes)
Mammalia C17H17orf98 35
  • 99.57 (n)
  • 100 (a)
rat
(Rattus norvegicus)
Mammalia LOC691189 35
  • 78.81 (n)
  • 80.13 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100494322 35
  • 57.11 (n)
  • 51.33 (a)
Species with no ortholog for C17orf98:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C17orf98 Gene

ENSEMBL:
Gene Tree for C17orf98 (if available)
TreeFam:
Gene Tree for C17orf98 (if available)

Paralogs for C17orf98 Gene

No data available for Paralogs for C17orf98 Gene

Variants for C17orf98 Gene

Sequence variations from dbSNP and Humsavar for C17orf98 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
VAR_044022 -
rs228260 -- 38,827,767(+) tagtc(C/T)cagct intron-variant
rs228261 -- 38,828,606(+) acccc(A/C/G)ctggt intron-variant
rs228262 -- 38,829,489(+) tgcag(C/T)gagcc intron-variant
rs228263 -- 38,829,785(+) ggtgt(A/G)atgaa intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C17orf98 Gene

Variant ID Type Subtype PubMed ID
nsv833439 CNV Loss 17160897
nsv908199 CNV Loss 21882294

Variation tolerance for C17orf98 Gene

Residual Variation Intolerance Score: 64.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.22; 69.93% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C17orf98 Gene

HapMap Linkage Disequilibrium report
C17orf98

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C17orf98 Gene

Disorders for C17orf98 Gene

Relevant External Links for C17orf98

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C17orf98

No disorders were found for C17orf98 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C17orf98 Gene

Publications for C17orf98 Gene

  1. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 2 3 4 67

Products for C17orf98 Gene

Sources for C17orf98 Gene

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