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Aliases for C17orf96 Gene

Aliases for C17orf96 Gene

  • Chromosome 17 Open Reading Frame 96 2 3 5
  • Proline Rich 28 2 3
  • Uncharacterized Protein ENSP00000317905 3
  • Uncharacterized Protein C17orf96 3
  • PRR28 3

External Ids for C17orf96 Gene

Previous GeneCards Identifiers for C17orf96 Gene

  • GC17M034084
  • GC17M036827
  • GC17M032624

Summaries for C17orf96 Gene

GeneCards Summary for C17orf96 Gene

C17orf96 (Chromosome 17 Open Reading Frame 96) is a Protein Coding gene. An important paralog of this gene is SKIDA1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C17orf96 Gene

Genomics for C17orf96 Gene

Regulatory Elements for C17orf96 Gene

Enhancers for C17orf96 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around C17orf96 on UCSC Golden Path with GeneCards custom track

Promoters for C17orf96 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for C17orf96 Gene

38,671,703 bp from pter
38,675,421 bp from pter
3,719 bases
Minus strand

Genomic View for C17orf96 Gene

Genes around C17orf96 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C17orf96 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C17orf96 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C17orf96 Gene

Proteins for C17orf96 Gene

  • Protein details for C17orf96 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein C17orf96
    Protein Accession:

    Protein attributes for C17orf96 Gene

    379 amino acids
    Molecular mass:
    39322 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C17orf96 Gene

Post-translational modifications for C17orf96 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C17orf96 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C17orf96 Gene

Domains & Families for C17orf96 Gene

Protein Domains for C17orf96 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C17orf96: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C17orf96 Gene

Function for C17orf96 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C17orf96 Gene

Localization for C17orf96 Gene

Subcellular locations from

Jensen Localization Image for C17orf96 Gene COMPARTMENTS Subcellular localization image for C17orf96 gene
Compartment Confidence
nucleus 3
cytosol 2
mitochondrion 2
endoplasmic reticulum 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C17orf96 Gene

Pathways & Interactions for C17orf96 Gene

SuperPathways for C17orf96 Gene

No Data Available

Interacting Proteins for C17orf96 Gene

Gene Ontology (GO) - Biological Process for C17orf96 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0048663 neuron fate commitment IEA,IBA --
genes like me logo Genes that share ontologies with C17orf96: view

No data available for Pathways by source and SIGNOR curated interactions for C17orf96 Gene

Drugs & Compounds for C17orf96 Gene

No Compound Related Data Available

Transcripts for C17orf96 Gene

mRNA/cDNA for C17orf96 Gene

(1) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C17orf96 Gene

Chromosome 17 open reading frame 96:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C17orf96 Gene

No ASD Table

Relevant External Links for C17orf96 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for C17orf96 Gene

mRNA expression in normal human tissues for C17orf96 Gene

mRNA differential expression in normal tissues according to GTEx for C17orf96 Gene

This gene is overexpressed in Brain - Cortex (x5.7), Brain - Anterior cingulate cortex (BA24) (x4.7), Brain - Frontal Cortex (BA9) (x4.6), and Testis (x4.3).

Protein differential expression in normal tissues from HIPED for C17orf96 Gene

This gene is overexpressed in Prostate (29.1), Saliva (26.8), and Fetal ovary (13.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C17orf96 Gene

NURSA nuclear receptor signaling pathways regulating expression of C17orf96 Gene:


SOURCE GeneReport for Unigene cluster for C17orf96 Gene:

genes like me logo Genes that share expression patterns with C17orf96: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for C17orf96 Gene

Orthologs for C17orf96 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C17orf96 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia C19H17orf96 34
  • 86.6 (n)
  • 81.22 (a)
(Canis familiaris)
Mammalia C9H17orf96 34
  • 88.01 (n)
  • 82.8 (a)
(Mus musculus)
Mammalia E130012A19Rik 34
  • 80.8 (n)
  • 76.09 (a)
E130012A19Rik 16
(Pan troglodytes)
Mammalia C17H17orf96 34
  • 98.94 (n)
  • 98.94 (a)
(Rattus norvegicus)
Mammalia LOC691153 34
  • 81.17 (n)
  • 77.57 (a)
Species where no ortholog for C17orf96 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C17orf96 Gene

Gene Tree for C17orf96 (if available)
Gene Tree for C17orf96 (if available)

Paralogs for C17orf96 Gene

Paralogs for C17orf96 Gene

genes like me logo Genes that share paralogs with C17orf96: view

Variants for C17orf96 Gene

Sequence variations from dbSNP and Humsavar for C17orf96 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs4795309 -- 38,675,699(+) CAAAC(A/C)GGTTG upstream-variant-2KB
rs4795310 -- 38,675,952(+) ATCAT(C/T)GGTGC upstream-variant-2KB
rs3887374 -- 38,672,557(-) TAGGG(A/C)TGAGG utr-variant-3-prime
rs8070641 -- 38,671,270(+) GAAGA(A/G)TATTT downstream-variant-500B
rs9905031 -- 38,671,679(+) cccaA(G/T)GAAAG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for C17orf96 Gene

Variant ID Type Subtype PubMed ID
nsv1070830 CNV deletion 25765185
nsv1146669 OTHER inversion 26484159
nsv833438 CNV loss 17160897

Variation tolerance for C17orf96 Gene

Gene Damage Index Score: 9.54; 88.89% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C17orf96 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C17orf96 Gene

Disorders for C17orf96 Gene

Relevant External Links for C17orf96

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for C17orf96 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C17orf96 Gene

Publications for C17orf96 Gene

  1. Reciprocal interactions of human C10orf12 and C17orf96 with PRC2 revealed by BioTAP-XL cross-linking and affinity purification. (PMID: 24550272) Alekseyenko A.A. … Kuroda M.I. (Proc. Natl. Acad. Sci. U.S.A. 2014) 2 3 65
  2. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 3 4 65
  3. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 65
  4. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3 65
  5. A quantitative atlas of mitotic phosphorylation. (PMID: 18669648) Dephoure N. … Gygi S.P. (Proc. Natl. Acad. Sci. U.S.A. 2008) 4 65

Products for C17orf96 Gene

Sources for C17orf96 Gene

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