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Aliases for C17orf96 Gene

Aliases for C17orf96 Gene

  • Chromosome 17 Open Reading Frame 96 2 3
  • Proline Rich 28 2 3
  • Uncharacterized Protein ENSP00000317905 3
  • Uncharacterized Protein C17orf96 3
  • PRR28 3

External Ids for C17orf96 Gene

Summaries for C17orf96 Gene

GeneCards Summary for C17orf96 Gene

C17orf96 (Chromosome 17 Open Reading Frame 96) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C17orf96 Gene

Genomics for C17orf96 Gene

Genomic Location for C17orf96 Gene

Start:
38,671,703 bp from pter
End:
38,675,421 bp from pter
Size:
3,719 bases
Orientation:
Minus strand

Genomic View for C17orf96 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C17orf96 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C17orf96 Gene

Regulatory Elements for C17orf96 Gene

Proteins for C17orf96 Gene

  • Protein details for C17orf96 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NHQ4-CQ096_HUMAN
    Recommended name:
    Uncharacterized protein C17orf96
    Protein Accession:
    A6NHQ4
    Secondary Accessions:

    Protein attributes for C17orf96 Gene

    Size:
    379 amino acids
    Molecular mass:
    39322 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C17orf96 Gene

Proteomics data for C17orf96 Gene at MOPED

Post-translational modifications for C17orf96 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C17orf96 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C17orf96 Gene

Domains for C17orf96 Gene

Protein Domains for C17orf96 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with C17orf96: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C17orf96 Gene

Function for C17orf96 Gene

Gene Ontology (GO) - Molecular Function for C17orf96 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with C17orf96: view

miRNA for C17orf96 Gene

miRTarBase miRNAs that target C17orf96

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C17orf96 Gene

Localization for C17orf96 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C17orf96 Gene COMPARTMENTS Subcellular localization image for C17orf96 gene
Compartment Confidence
mitochondrion 2
nucleus 2
endoplasmic reticulum 1

No data available for Gene Ontology (GO) - Cellular Components for C17orf96 Gene

Pathways for C17orf96 Gene

SuperPathways for C17orf96 Gene

No Data Available

Interacting Proteins for C17orf96 Gene

Gene Ontology (GO) - Biological Process for C17orf96 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0048663 neuron fate commitment IEA --
genes like me logo Genes that share ontologies with C17orf96: view

No data available for Pathways by source for C17orf96 Gene

Transcripts for C17orf96 Gene

mRNA/cDNA for C17orf96 Gene

(1) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C17orf96 Gene

Chromosome 17 open reading frame 96:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C17orf96 Gene

No ASD Table

Relevant External Links for C17orf96 Gene

GeneLoc Exon Structure for
C17orf96
ECgene alternative splicing isoforms for
C17orf96

Expression for C17orf96 Gene

mRNA expression in normal human tissues for C17orf96 Gene

mRNA differential expression in normal tissues according to GTEx for C17orf96 Gene

This gene is overexpressed in Brain - Cortex (5.7), Brain - Anterior cingulate cortex (BA24) (4.7), Brain - Frontal Cortex (BA9) (4.6), and Testis (4.3).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C17orf96 Gene

SOURCE GeneReport for Unigene cluster for C17orf96 Gene Hs.445574

genes like me logo Genes that share expressions with C17orf96: view

Orthologs for C17orf96 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C17orf96 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C17H17orf96 36
  • 98.94 (n)
  • 98.94 (a)
cow
(Bos Taurus)
Mammalia C19H17orf96 36
  • 86.6 (n)
  • 81.22 (a)
dog
(Canis familiaris)
Mammalia C9H17orf96 36
  • 88.01 (n)
  • 82.8 (a)
mouse
(Mus musculus)
Mammalia E130012A19Rik 36
  • 80.8 (n)
  • 76.09 (a)
E130012A19Rik 16
rat
(Rattus norvegicus)
Mammalia LOC691153 36
  • 81.17 (n)
  • 77.57 (a)
Species with no ortholog for C17orf96:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C17orf96 Gene

ENSEMBL:
Gene Tree for C17orf96 (if available)
TreeFam:
Gene Tree for C17orf96 (if available)

Paralogs for C17orf96 Gene

No data available for Paralogs for C17orf96 Gene

Variants for C17orf96 Gene

Sequence variations from dbSNP and Humsavar for C17orf96 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs3887374 -- 38,672,557(-) TAGGG(A/C)TGAGG utr-variant-3-prime
rs4795309 -- 38,675,699(+) CAAAC(A/C)GGTTG upstream-variant-2KB
rs4795310 -- 38,675,952(+) ATCAT(C/T)GGTGC upstream-variant-2KB
rs8070641 -- 38,671,270(+) GAAGA(A/G)TATTT downstream-variant-500B
rs9905031 -- 38,671,679(+) cccaA(G/T)GAAAG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for C17orf96 Gene

Variant ID Type Subtype PubMed ID
nsv908194 CNV Loss 21882294
nsv833438 CNV Loss 17160897

Relevant External Links for C17orf96 Gene

HapMap Linkage Disequilibrium report
C17orf96

Disorders for C17orf96 Gene

No disorders were found for C17orf96 Gene.

No data available for UniProtKB/Swiss-Prot for C17orf96 Gene

Publications for C17orf96 Gene

  1. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 3 4
  2. Reciprocal interactions of human C10orf12 and C17orf96 with PRC2 revealed by BioTAP-XL cross-linking and affinity purification. (PMID: 24550272) Alekseyenko A.A. … Kuroda M.I. (Proc. Natl. Acad. Sci. U.S.A. 2014) 2 3
  3. A quantitative atlas of mitotic phosphorylation. (PMID: 18669648) Dephoure N. … Gygi S.P. (Proc. Natl. Acad. Sci. U.S.A. 2008) 4
  4. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3

Products for C17orf96 Gene

Sources for C17orf96 Gene

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