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Aliases for C17orf89 Gene

Aliases for C17orf89 Gene

  • Chromosome 17 Open Reading Frame 89 2 3 5

External Ids for C17orf89 Gene

Previous GeneCards Identifiers for C17orf89 Gene

  • GC17P076828
  • GC17P079213
  • GC17P074649

Summaries for C17orf89 Gene

GeneCards Summary for C17orf89 Gene

C17orf89 (Chromosome 17 Open Reading Frame 89) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C17orf89 Gene

Genomics for C17orf89 Gene

Regulatory Elements for C17orf89 Gene

Promoters for C17orf89 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around C17orf89 on UCSC Golden Path with GeneCards custom track

Genomic Location for C17orf89 Gene

Chromosome:
17
Start:
81,239,239 bp from pter
End:
81,241,298 bp from pter
Size:
2,060 bases
Orientation:
Plus strand

Genomic View for C17orf89 Gene

Genes around C17orf89 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C17orf89 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C17orf89 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C17orf89 Gene

Proteins for C17orf89 Gene

  • Protein details for C17orf89 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A1L188-CQ089_HUMAN
    Recommended name:
    Uncharacterized protein C17orf89
    Protein Accession:
    A1L188

    Protein attributes for C17orf89 Gene

    Size:
    74 amino acids
    Molecular mass:
    7756 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C17orf89 Gene

Proteomics data for C17orf89 Gene at MOPED

Post-translational modifications for C17orf89 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C17orf89 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C17orf89 Gene

Domains & Families for C17orf89 Gene

Protein Domains for C17orf89 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C17orf89: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C17orf89 Gene

Function for C17orf89 Gene

Phenotypes for C17orf89 Gene

GenomeRNAi human phenotypes for C17orf89:
genes like me logo Genes that share phenotypes with C17orf89: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C17orf89 Gene

Localization for C17orf89 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C17orf89 Gene COMPARTMENTS Subcellular localization image for C17orf89 gene
Compartment Confidence
mitochondrion 4
extracellular 2
cytosol 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C17orf89 Gene

Pathways & Interactions for C17orf89 Gene

SuperPathways for C17orf89 Gene

No Data Available

Interacting Proteins for C17orf89 Gene

Gene Ontology (GO) - Biological Process for C17orf89 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C17orf89 Gene

Drugs & Compounds for C17orf89 Gene

No Compound Related Data Available

Transcripts for C17orf89 Gene

Unigene Clusters for C17orf89 Gene

Chromosome 17 open reading frame 89:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C17orf89 Gene

No ASD Table

Relevant External Links for C17orf89 Gene

GeneLoc Exon Structure for
C17orf89
ECgene alternative splicing isoforms for
C17orf89

Expression for C17orf89 Gene

mRNA expression in normal human tissues for C17orf89 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for C17orf89 Gene

This gene is overexpressed in Stomach (22.7), Liver (19.8), and Plasma (12.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MOPED, and MaxQB for C17orf89 Gene



SOURCE GeneReport for Unigene cluster for C17orf89 Gene Hs.356545

genes like me logo Genes that share expression patterns with C17orf89: view

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for C17orf89 Gene

Orthologs for C17orf89 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C17orf89 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C17H17orf89 35
  • 97.75 (n)
  • 98.65 (a)
C17orf89 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C19H17orf89 35
  • 85.84 (n)
  • 89.04 (a)
dog
(Canis familiaris)
Mammalia C9H17orf89 35
  • 88.58 (n)
  • 89.04 (a)
C17orf89 36
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 1810043H04Rik 16
1810043H04Rik 36
  • 86 (a)
OneToOne
1810043H04Rik 35
  • 85.39 (n)
  • 87.67 (a)
rat
(Rattus norvegicus)
Mammalia LOC690871 35
  • 86.3 (n)
  • 89.04 (a)
zebrafish
(Danio rerio)
Actinopterygii C12H17orf89 36
  • 51 (a)
OneToOne
Species with no ortholog for C17orf89:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C17orf89 Gene

ENSEMBL:
Gene Tree for C17orf89 (if available)
TreeFam:
Gene Tree for C17orf89 (if available)

Paralogs for C17orf89 Gene

Pseudogenes.org Pseudogenes for C17orf89 Gene

genes like me logo Genes that share paralogs with C17orf89: view

No data available for Paralogs for C17orf89 Gene

Variants for C17orf89 Gene

Sequence variations from dbSNP and Humsavar for C17orf89 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs7342981 -- 81,241,763(+) ACATC(C/T)TGACT downstream-variant-500B
rs60129545 -- 81,241,455(+) GTGAA(C/G)CCTGC downstream-variant-500B
rs76221565 -- 81,241,127(+) AATGG(C/T)GAAGA utr-variant-3-prime
rs112417848 -- 81,241,219(+) GTGTC(C/T)GTAAA utr-variant-3-prime
rs112102381 -- 81,241,301(+) GTGTG(C/T)AGACT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for C17orf89 Gene

Variant ID Type Subtype PubMed ID
esv26223 CNV Gain+Loss 19812545
nsv828128 CNV Loss 20364138
nsv909000 CNV Loss 21882294
dgv3308n71 CNV Loss 21882294
nsv470619 CNV Loss 18288195
dgv3310n71 CNV Loss 21882294
dgv3316n71 CNV Loss 21882294
nsv909052 CNV Loss 21882294
dgv46n68 CNV Loss 17160897
dgv3317n71 CNV Loss 21882294
dgv1003e1 CNV Complex 17122850
nsv428351 CNV Gain 18775914
dgv3318n71 CNV Loss 21882294
dgv3319n71 CNV Loss 21882294
nsv457971 CNV Loss 19166990
dgv3320n71 CNV Loss 21882294
dgv3321n71 CNV Loss 21882294
nsv909067 CNV Gain+Loss 21882294
dgv3322n71 CNV Loss 21882294
nsv509677 CNV Insertion 20534489
nsv909074 CNV Loss 21882294
nsv2161 CNV Insertion 18451855

Relevant External Links for C17orf89 Gene

HapMap Linkage Disequilibrium report
C17orf89

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C17orf89 Gene

Disorders for C17orf89 Gene

Relevant External Links for C17orf89

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C17orf89

No disorders were found for C17orf89 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C17orf89 Gene

Publications for C17orf89 Gene

  1. Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry. (PMID: 17287340) Molina H. … Pandey A. (Proc. Natl. Acad. Sci. U.S.A. 2007) 2 3 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C17orf89 Gene

Sources for C17orf89 Gene

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