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Aliases for C17orf85 Gene

Aliases for C17orf85 Gene

  • Chromosome 17 Open Reading Frame 85 2 3
  • Uncharacterized Protein C17orf85 3
  • CTD-3195I5.1 3
  • ELG Protein 2
  • Protein ELG 4
  • HSA277841 3
  • ELG 3

External Ids for C17orf85 Gene

Previous GeneCards Identifiers for C17orf85 Gene

  • GC17M003662
  • GC17M003604
  • GC17M003715
  • GC17M003720
  • GC17M003724
  • GC17M003727
  • GC17M003731

Summaries for C17orf85 Gene

GeneCards Summary for C17orf85 Gene

C17orf85 (Chromosome 17 Open Reading Frame 85) is a Protein Coding gene. Diseases associated with C17orf85 include vertebral artery insufficiency. GO annotations related to this gene include nucleotide binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C17orf85 Gene

Genomics for C17orf85 Gene

Regulatory Elements for C17orf85 Gene

Genomic Location for C17orf85 Gene

Start:
3,802,163 bp from pter
End:
3,846,251 bp from pter
Size:
44,089 bases
Orientation:
Minus strand

Genomic View for C17orf85 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C17orf85 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C17orf85 Gene

Proteins for C17orf85 Gene

  • Protein details for C17orf85 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q53F19-CQ085_HUMAN
    Recommended name:
    Uncharacterized protein C17orf85
    Protein Accession:
    Q53F19
    Secondary Accessions:
    • B3KWG7
    • Q7L406
    • Q96FK1
    • Q9NXZ4

    Protein attributes for C17orf85 Gene

    Size:
    620 amino acids
    Molecular mass:
    70593 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAD97190.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for C17orf85 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C17orf85 Gene

Proteomics data for C17orf85 Gene at MOPED

Post-translational modifications for C17orf85 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C17orf85 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C17orf85 Gene

Domains for C17orf85 Gene

Protein Domains for C17orf85 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C17orf85 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C17orf85: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C17orf85 Gene

Function for C17orf85 Gene

Gene Ontology (GO) - Molecular Function for C17orf85 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with C17orf85: view

Phenotypes for C17orf85 Gene

GenomeRNAi human phenotypes for C17orf85:
genes like me logo Genes that share phenotypes with C17orf85: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C17orf85

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C17orf85 Gene

Localization for C17orf85 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C17orf85 Gene COMPARTMENTS Subcellular localization image for C17orf85 gene
Compartment Confidence
nucleus 3
cytosol 2
endoplasmic reticulum 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C17orf85 Gene

Pathways for C17orf85 Gene

SuperPathways for C17orf85 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C17orf85 Gene

None

No data available for Pathways by source for C17orf85 Gene

Transcripts for C17orf85 Gene

Unigene Clusters for C17orf85 Gene

Chromosome 17 open reading frame 85:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C17orf85

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C17orf85 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13
SP1:
SP2:
SP3: -
SP4:
SP5:

Relevant External Links for C17orf85 Gene

GeneLoc Exon Structure for
C17orf85
ECgene alternative splicing isoforms for
C17orf85

Expression for C17orf85 Gene

mRNA expression in normal human tissues for C17orf85 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C17orf85 Gene

SOURCE GeneReport for Unigene cluster for C17orf85 Gene Hs.120963

genes like me logo Genes that share expressions with C17orf85: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C17orf85 Gene

Orthologs for C17orf85 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C17orf85 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C17H17orf85 35
  • 99.5 (n)
  • 99.83 (a)
C17orf85 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C17orf85 36
  • 95 (a)
OneToOne
C19H17orf85 35
  • 90.94 (n)
  • 94.46 (a)
dog
(Canis familiaris)
Mammalia C17orf85 36
  • 90 (a)
OneToOne
C9H17orf85 35
  • 92.4 (n)
  • 93.97 (a)
mouse
(Mus musculus)
Mammalia 1200014J11Rik 35
  • 89.63 (n)
  • 94.84 (a)
1200014J11Rik 16
1200014J11Rik 36
  • 95 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C17orf85 36
  • 81 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1308139 35
  • 88.13 (n)
  • 94.01 (a)
chicken
(Gallus gallus)
Aves C19H17ORF85 35
  • 76.73 (n)
  • 82.94 (a)
C19H17ORF85 36
  • 82 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.33463 35
tropical clawed frog
(Silurana tropicalis)
Amphibia c17orf85 35
  • 68.63 (n)
  • 71.58 (a)
Str.1399 35
zebrafish
(Danio rerio)
Actinopterygii C21H17orf85 36
  • 55 (a)
OneToOne
zgc55870 35
zgc:55870 35
  • 63.87 (n)
  • 64.03 (a)
Species with no ortholog for C17orf85:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C17orf85 Gene

ENSEMBL:
Gene Tree for C17orf85 (if available)
TreeFam:
Gene Tree for C17orf85 (if available)

Paralogs for C17orf85 Gene

No data available for Paralogs for C17orf85 Gene

Variants for C17orf85 Gene

Sequence variations from dbSNP and Humsavar for C17orf85 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs11469 -- 3,807,536(-) GTAAA(A/T)GAATG utr-variant-3-prime, intron-variant
rs170150 -- 3,831,782(-) atctt(A/G)ttctt intron-variant
rs170151 -- 3,827,239(-) AGTTT(A/T)AATAT intron-variant
rs172645 -- 3,844,588(-) caggc(C/G)tgagc intron-variant
rs177986 -- 3,831,400(-) agaga(C/T)ggggt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C17orf85 Gene

Variant ID Type Subtype PubMed ID
nsv907570 CNV Gain 21882294
nsv469791 CNV Complex 16826518
nsv907571 CNV Loss 21882294
nsv833343 CNV Loss 17160897
nsv520428 CNV Gain 19592680
esv2658361 CNV Deletion 23128226
nsv512472 CNV Loss 21212237
esv2715532 CNV Deletion 23290073
esv2672645 CNV Deletion 23128226
nsv907572 CNV Loss 21882294
dgv3043n71 CNV Loss 21882294
dgv3044n71 CNV Loss 21882294

Relevant External Links for C17orf85 Gene

HapMap Linkage Disequilibrium report
C17orf85

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C17orf85 Gene

Disorders for C17orf85 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for C17orf85 Gene including...

Search for C17orf85 Gene in MalaCards »

(2) University of Copenhagen DISEASES for C17orf85 Gene

genes like me logo Genes that share disorders with C17orf85: view

No data available for UniProtKB/Swiss-Prot for C17orf85 Gene

Publications for C17orf85 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Studies on transcriptional regulation of the mucosal T-cell integrin alphaEbeta7 (CD103). (PMID: 11412301) Robinson P.W. … Kilshaw P.J. (Immunology 2001) 2 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. (PMID: 8125298) Maruyama K. … Sugano S. (Gene 1994) 3
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3

Products for C17orf85 Gene

Sources for C17orf85 Gene

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