Aliases for C17orf80 Gene
Aliases for C17orf80 Gene
External Ids for C17orf80 Gene
- HGNC: 29601
- Entrez Gene: 55028
- Ensembl: ENSG00000141219
- UniProtKB: Q9BSJ5
Previous GeneCards Identifiers for C17orf80 Gene
- GC17P068741
- GC17P071228
- GC17P066637
Summaries for C17orf80 Gene
GeneCards Summary for C17orf80 Gene
C17orf80 (Chromosome 17 Open Reading Frame 80) is a Protein Coding gene.
No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C17orf80 Gene
Genomics for C17orf80 Gene
Regulatory Elements for C17orf80 Gene
Enhancers for C17orf80 Gene
| GeneHancer Identifier | Score | Enhancer Sources | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Other Gene Targets for Enhancer |
|---|
Enhancers around C17orf80 on UCSC Golden Path with GeneCards custom track
Promoters for C17orf80 Gene
| Ensembl Regulatory Elements (ENSRs) | TSS Distance (bp) | Size (bp) | Binding Sites for Transcription Factors within promoters |
|---|
ENSRs around C17orf80 on UCSC Golden Path with GeneCards custom track
- Transcription factor binding sites by QIAGEN in the C17orf80 gene promoter:
Regulatory Element Products
Genomic Location for C17orf80 Gene
- Chromosome:
- 17
- Start:
- 73,232,233 bp from pter
- End:
- 73,248,959 bp from pter
- Size:
- 16,727 bases
- Orientation:
- Plus strand
Genomic View for C17orf80 Gene
Genes around C17orf80 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 17q25.1 by Ensembl
- 17q25.1 by Entrez Gene
- 17q25.1 by HGNC
C17orf80 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for C17orf80 Gene
Proteins for C17orf80 Gene
-
Protein details for C17orf80 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9BSJ5-CQ080_HUMAN
- Recommended name:
- Uncharacterized protein C17orf80
- Protein Accession:
- Q9BSJ5
- A8K9X3
- Q5JB45
- Q6YAU3
- Q9H0L9
- Q9H5E6
- Q9NWN5
Protein attributes for C17orf80 Gene
- Size:
- 609 amino acids
- Molecular mass:
- 67315 Da
- Quaternary structure:
- No Data Available
- SequenceCaution:
-
- Sequence=AAP72185.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAA91344.1; Type=Frameshift; Positions=121; Evidence={ECO:0000305}; Sequence=BAB15680.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};
Protein Expression for C17orf80 Gene
Post-translational modifications for C17orf80 Gene
Other Protein References for C17orf80 Gene
Antibody Products
-
Custom Antibody ServicesOriGene Antibodies for C17orf80
- Novus Biologicals Antibodies for C17orf80
- Abcam antibodies for C17orf80
- GeneTex C17orf80 antibody for C17orf80
-
Santa Cruz Biotechnology (SCBT) Antibodies for C17orf80
Protein Products
-
OriGene Purified Proteins for C17orf80
- Search Origene for MassSpec and Protein Over-expression Lysates for C17orf80
- Origene Custom Protein Services for C17orf80
- Search GeneTex for Proteins for C17orf80
Assay Products
No data available for DME Specific Peptides for C17orf80 Gene
Domains & Families for C17orf80 Gene
Protein Domains for C17orf80 Gene
- ProtoNet:
Suggested Antigen Peptide Sequences for C17orf80 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families and UniProtKB/Swiss-Prot for C17orf80 Gene
Function for C17orf80 Gene
Phenotypes for C17orf80 Gene
- GenomeRNAi human phenotypes for C17orf80:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
-
ViGene Biosciences lentiviral particle packaged cDNA for C17orf80 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for C17orf80 gene
- Search ViGene Biosciences for C17orf80
CRISPR Products
-
OriGene CRISPR knockouts for C17orf80
-
Santa Cruz Biotechnology (SCBT) CRISPR for C17orf80
- GenScript: Design CRISPR guide RNA sequences for C17orf80
miRNA for C17orf80 Gene
- miRTarBase miRNAs that target C17orf80
-
- hsa-mir-15a-5p (MIRT003881)
- hsa-mir-16-5p (MIRT004375)
- hsa-mir-155-5p (MIRT020493)
- hsa-mir-125a-5p (MIRT045779)
- hsa-mir-125b-5p (MIRT046098)
- hsa-mir-3658 (MIRT446225)
- hsa-mir-580-3p (MIRT446226)
- hsa-mir-6864-5p (MIRT446227)
- hsa-mir-6126 (MIRT446228)
- hsa-mir-526b-5p (MIRT446229)
- hsa-mir-3653-3p (MIRT446230)
- hsa-mir-539-5p (MIRT446231)
- hsa-mir-1252-5p (MIRT446232)
- hsa-mir-4635 (MIRT446233)
- hsa-mir-8083 (MIRT446234)
- hsa-mir-5197-3p (MIRT446235)
miRNA Products
- Search ViGene Biosciences for C17orf80
Inhibitory RNA Products
- Origene RNAi, shRNA, and siRNA products in human, mouse, rat for C17orf80
- Browse OriGene Inhibitory RNA Products For C17orf80
-
ViGene Biosciences ready-to-package AAV shRNAs for C17orf80 gene
Clone Products
- OriGene clones in human for C17orf80
- OriGene ORF clones in human for C17orf80
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
Cell Line Products
-
ViGene Biosciences adenoviral particle packaged cDNA for C17orf80 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for C17orf80 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for C17orf80 gene
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C17orf80 Gene
Localization for C17orf80 Gene
Subcellular locations from UniProtKB/Swiss-Prot for C17orf80 Gene
- Membrane; Single-pass membrane protein.
| Compartment | Confidence |
|---|---|
| extracellular | 5 |
| nucleus | 3 |
| cytosol | 2 |
No data available for Gene Ontology (GO) - Cellular Components for C17orf80 Gene
More details on SuperPathways for C17orf80Transcripts for C17orf80 Gene
mRNA/cDNA for C17orf80 Gene
- (9) REFSEQ mRNAs :
- (8) Additional mRNA sequences :
- (143) Selected AceView cDNA sequences:
- (9) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for C17orf80 Gene
CRISPR Products
-
OriGene CRISPR knockouts for C17orf80
-
Santa Cruz Biotechnology (SCBT) CRISPR for C17orf80
- GenScript: Design CRISPR guide RNA sequences for C17orf80
miRNA Products
- Search ViGene Biosciences for C17orf80
Inhibitory RNA Products
- Origene RNAi, shRNA, and siRNA products in human, mouse, rat for C17orf80
- Browse OriGene Inhibitory RNA Products For C17orf80
-
ViGene Biosciences ready-to-package AAV shRNAs for C17orf80 gene
Clone Products
- OriGene clones in human for C17orf80
- OriGene ORF clones in human for C17orf80
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
Flow Cytometry Products
Expression for C17orf80 Gene
mRNA differential expression in normal tissues according to GTEx for C17orf80 Gene
This gene is overexpressed in Testis (x5.0).
This gene is overexpressed in Kidney (25.6), Liver (13.8), Lung (6.9), and Breast (6.6).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MOPED, and MaxQB for C17orf80 Gene
SOURCE GeneReport for Unigene cluster for C17orf80 Gene Hs.12929
Primer Products
-
OriGene qPCR primer pairs and template standards for C17orf80
-
OriGene qPCR primer pairs for C17orf80
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for C17orf80 Gene
Orthologs for C17orf80 Gene
This gene was present in the common ancestor of mammals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| cow (Bos Taurus) |
Mammalia | C19H17orf80 35 |
|
||
| C17orf80 36 |
|
OneToOne | |||
| dog (Canis familiaris) |
Mammalia | C9H17orf80 35 |
|
||
| C17orf80 36 |
|
OneToOne | |||
| mouse (Mus musculus) |
Mammalia | D11Wsu47e 35 |
|
||
| D11Wsu47e 16 |
|
||||
| D11Wsu47e 36 |
|
OneToOne | |||
| chimpanzee (Pan troglodytes) |
Mammalia | C17H17orf80 35 |
|
||
| C17H17orf80 36 |
|
OneToOne | |||
| rat (Rattus norvegicus) |
Mammalia | MGC95210 35 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | C17orf80 36 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | C17orf80 36 |
|
OneToOne |
- Species with no ortholog for C17orf80:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for C17orf80 Gene
Pseudogenes.org Pseudogenes for C17orf80 Gene
No data available for Paralogs for C17orf80 Gene
Variants for C17orf80 Gene
| SNP ID | Clin | Chr 17 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs9902726 | - | 73,236,158(+) | CTACT(A/G)GTGAT | intron-variant, reference, missense | |
| rs34784472 | - | 73,236,446(+) | CAGAA(A/C)AGCAG | intron-variant, reference, missense | |
| rs745143 | - | 73,236,548(-) | AATGA(A/G)CAAAC | intron-variant, reference, missense | |
| rs904384 | - | 73,236,665(-) | ACAAT(G/T)ATGAT | intron-variant, reference, missense | |
| rs904383 | - | 73,236,668(-) | GACAC(A/G)ATGAT | intron-variant, reference, missense |
Residual Variation Intolerance Score:
90% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
3.74;
57.71% of all genes are more intolerant (likely to be disease-causing)
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for C17orf80 Gene
Disorders for C17orf80 Gene
Relevant External Links for C17orf80
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- C17orf80
No disorders were found for C17orf80 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C17orf80 Gene
Publications for C17orf80 Gene
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 67
- The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
- Large-scale proteomics and phosphoproteomics of urinary exosomes. (PMID: 19056867) Gonzales P.A. … Knepper M.A. (J. Am. Soc. Nephrol. 2009) 3
- Subproteome analysis of the neutrophil cytoskeleton. (PMID: 19294702) Xu P. … Radulovic M. (Proteomics 2009) 23
- The LIFEdb database in 2006. (PMID: 16381901) Mehrle A. … Wiemann S. (Nucleic Acids Res. 2006) 3
Products for C17orf80 Gene
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- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
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- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Custom Antibody ServicesOriGene Antibodies for C17orf80
- Browse OriGene ELISA Kits
- Custom Assay Services
- OriGene Purified Proteins for C17orf80
- Search Origene for MassSpec and Protein Over-expression Lysates for C17orf80
- Origene Custom Protein Services for C17orf80
- Origene siRNA, shRNA, and RNAi products in human, mouse, rat for C17orf80
- Browse OriGene Inhibitory RNA Products For C17orf80
- OriGene qPCR primer pairs for C17orf80
- OriGene qPCR primer pairs and template standards for C17orf80
- OriGene CRISPR knockouts for C17orf80
- OriGene clones in human for C17orf80
- OriGene ORF clones in human for C17orf80
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- GenScript: Next-day shipping cDNA clones in your preferred vector
- GenScript Custom Purified and Recombinant Proteins Services for C17orf80
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- GenScript: Design CRISPR guide RNA sequences for C17orf80
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
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- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for C17orf80
- Novus Biologicals Antibodies for C17orf80
- Novus Biologicals proteins and lysates for C17orf80
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- ViGene Biosciences adenoviral particle packaged cDNA for C17orf80 gene
- ViGene Biosciences lentiviral particle packaged cDNA for C17orf80 gene
- ViGene Biosciences lentiviral particle packaged cDNA for C17orf80 gene
- ViGene Biosciences ready-to-package AAV shRNAs for C17orf80 gene
- ViGene Biosciences ready-to-package AAV shRNAs for C17orf80 gene
- ViGene Biosciences ready-to-package AAV shRNAs for C17orf80 gene
- Search ViGene Biosciences for C17orf80
- Search ViGene Biosciences for C17orf80
- Santa Cruz Biotechnology (SCBT) Antibodies for C17orf80
- Search Santa Cruz Biotechnology (SCBT) for C17orf80 siRNA/shRNA
- Santa Cruz Biotechnology (SCBT) CRISPR for C17orf80
Sources for C17orf80 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) I2D
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) UniGene
- (28) AceView
- (29) RNAdb
- (30) ASD
- (31) ECgene
- (32) GeneAnnot
- (33) SAGE
- (34) SOURCE
- (35) HomoloGene
- (36) PanEnsembl
- (37) euGenes
- (38) SGD
- (39) FlyBase
- (40) WormBase
- (41) Pseudogene
- (42) DGV
- (43) dbSNP
- (44) HapMap
- (45) GenAtlas
- (46) GeneTests
- (47) HGMD
- (48) GAD
- (49) LSDB
- (50) BGMUT
- (51) HuGE
- (52) eBioscience
- (53) Atlas
- (54) Cell Signaling Technology
- (55) GenBank
- (56) H-invDB
- (57) HORDE
- (58) HUGE
- (59) IMGT
- (60) Leiden
- (61) MILLIPORE
- (62) miRBase
- (63) DME
- (64) Nature
- (65) NCBI
- (66) OriGene
- (67) PubMed
- (68) R&D Systems
- (69) Salk
- (70) TGDB
- (71) Tufts
- (72) YEDA
- (73) CROW21
- (74) Tocris
- (75) Abcam
- (76) Novus
- (77) ProSpec
- (78) Sino Biological
- (79) GenScript
- (80) Qiagen
- (81) Cloud-Clone Corp.
- (82) Enzo Life Sciences
- (83) OCA
- (84) Proteopedia
- (85) MOPED
- (86) SPIRE
- (87) neXtProt
- (88) Reactome
- (89) GeneGo (Thomson Reuters)
- (90) fRNAdb
- (91) DISEASES
- (92) SIMAP
- (93) GenomeRNAi
- (94) LifeMap
- (95) miRTarBase
- (96) MalaCards
- (97) Invitrogen
- (98) BitterDB
- (99) Vector BioLabs
- (100) ESI-BIO
- (101) RefSeq
- (102) BioSystems
- (103) MaxQB
- (104) IUPHAR
- (105) BioGPS
- (106) Illumina
- (107) COMPARTMENTS
- (108) HOMER
- (109) PaxDb
- (110) ApexBio
- (111) Addgene
- (112) Advanced Cell Diagnostics
- (113) antibodies-online
- (114) CYP
- (115) NONCODE
- (116) SwitchGear Genomics
- (117) TreeFam
- (118) PathCards
- (119) GeneReviews
- (120) GeneTex
- (121) Taconic Biosciences
- (122) GTEx
- (123) ProteomicsDB
- (124) SCBT
- (125) DGIdb
- (126) ClinicalTrials
- (127) FDA Approved Drugs
- (128) RVIS
- (129) SIGNOR
- (130) diseasecard
- (131) NIH Rare Diseases
- (132) Orphanet
- (133) UMLS
- (134) GTR
- (135) Disease Ontology
- (136) Genetics Home Reference
- (137) MeSH
- (138) MedlinePlus
- (139) CDC
- (140) NINDS
- (141) NCBI Bookshelf
- (142) ClinVar
- (143) Gene Damage Index
- (144) ViGene Biosciences
- (145) HPO
- (146) UDN
- (147) VISTA
- (148) FANTOM5
- (149) ENCODE
- (150) ProSci
- (151) Horizon