Free for academic non-profit institutions. Other users need a Commercial license

Aliases for C17orf80 Gene

Aliases for C17orf80 Gene

  • Chromosome 17 Open Reading Frame 80 2 3
  • Cell Migration-Inducing Gene 3 Protein 3 4
  • Human Lung Cancer Oncogene 8 Protein 3 4
  • Sperm-Expressed Protein 1 2 3
  • HLC-8 3 4
  • Uncharacterized Protein C17orf80 3
  • Lung Cancer-Related Protein 8 3
  • Migration-Inducing Protein 3 2
  • SPEP1 3
  • MIG3 3

External Ids for C17orf80 Gene

Summaries for C17orf80 Gene

GeneCards Summary for C17orf80 Gene

C17orf80 (Chromosome 17 Open Reading Frame 80) is a Protein Coding gene. Diseases associated with C17orf80 include lung cancer.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C17orf80 Gene

Genomics for C17orf80 Gene

Genomic Location for C17orf80 Gene

Start:
73,232,233 bp from pter
End:
73,248,959 bp from pter
Size:
16,727 bases
Orientation:
Plus strand

Genomic View for C17orf80 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C17orf80 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C17orf80 Gene

Regulatory Elements for C17orf80 Gene

Proteins for C17orf80 Gene

  • Protein details for C17orf80 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BSJ5-CQ080_HUMAN
    Recommended name:
    Uncharacterized protein C17orf80
    Protein Accession:
    Q9BSJ5
    Secondary Accessions:
    • A8K9X3
    • Q5JB45
    • Q6YAU3
    • Q9H0L9
    • Q9H5E6
    • Q9NWN5

    Protein attributes for C17orf80 Gene

    Size:
    609 amino acids
    Molecular mass:
    67315 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAP72185.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAA91344.1; Type=Frameshift; Positions=121; Evidence={ECO:0000305}; Sequence=BAB15680.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for C17orf80 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C17orf80 Gene

Proteomics data for C17orf80 Gene at MOPED

Post-translational modifications for C17orf80 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for C17orf80 Gene

Domains for C17orf80 Gene

Protein Domains for C17orf80 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for C17orf80 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C17orf80: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C17orf80 Gene

Function for C17orf80 Gene

Gene Ontology (GO) - Molecular Function for C17orf80 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with C17orf80: view

Phenotypes for C17orf80 Gene

GenomeRNAi human phenotypes for C17orf80:
genes like me logo Genes that share phenotypes with C17orf80: view

miRNA for C17orf80 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for C17orf80 Gene

Localization for C17orf80 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C17orf80 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C17orf80 Gene COMPARTMENTS Subcellular localization image for C17orf80 gene
Compartment Confidence
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for C17orf80 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
GO:0070062 extracellular exosome IDA 19056867
genes like me logo Genes that share ontologies with C17orf80: view

Pathways for C17orf80 Gene

SuperPathways for C17orf80 Gene

No Data Available

Interacting Proteins for C17orf80 Gene

Gene Ontology (GO) - Biological Process for C17orf80 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with C17orf80: view

No data available for Pathways by source for C17orf80 Gene

Transcripts for C17orf80 Gene

Unigene Clusters for C17orf80 Gene

Chromosome 17 open reading frame 80:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C17orf80 Gene

No ASD Table

Relevant External Links for C17orf80 Gene

GeneLoc Exon Structure for
C17orf80
ECgene alternative splicing isoforms for
C17orf80

Expression for C17orf80 Gene

mRNA expression in normal human tissues for C17orf80 Gene

mRNA differential expression in normal tissues according to GTEx for C17orf80 Gene

This gene is overexpressed in Testis (5.0).

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for C17orf80 Gene

SOURCE GeneReport for Unigene cluster for C17orf80 Gene Hs.12929

genes like me logo Genes that share expressions with C17orf80: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for C17orf80 Gene

Orthologs for C17orf80 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C17orf80 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C17H17orf80 35
  • 98.74 (n)
  • 98.19 (a)
C17H17orf80 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C17orf80 36
  • 55 (a)
OneToOne
C19H17orf80 35
  • 73.02 (n)
  • 57.33 (a)
dog
(Canis familiaris)
Mammalia C17orf80 36
  • 64 (a)
OneToOne
C9H17orf80 35
  • 78.02 (n)
  • 65.59 (a)
mouse
(Mus musculus)
Mammalia D11Wsu47e 35
  • 65.38 (n)
  • 49.45 (a)
D11Wsu47e 16
D11Wsu47e 36
  • 48 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C17orf80 36
  • 33 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C17orf80 36
  • 31 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia MGC95210 35
  • 65.38 (n)
  • 51.83 (a)
Species with no ortholog for C17orf80:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C17orf80 Gene

ENSEMBL:
Gene Tree for C17orf80 (if available)
TreeFam:
Gene Tree for C17orf80 (if available)

Paralogs for C17orf80 Gene

Pseudogenes.org Pseudogenes for C17orf80 Gene

genes like me logo Genes that share paralogs with C17orf80: view

No data available for Paralogs for C17orf80 Gene

Variants for C17orf80 Gene

Sequence variations from dbSNP and Humsavar for C17orf80 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs745142 - 73,236,742(-) TGGAA(C/G)TGACT missense, reference, intron-variant
rs745143 - 73,236,548(-) AATGA(A/G)CAAAC missense, reference, intron-variant
rs904383 - 73,236,668(-) GACAC(A/G)ATGAT missense, reference, intron-variant
rs904384 - 73,236,665(-) ACAAT(G/T)ATGAT intron-variant, missense, reference
rs966939 -- 73,237,597(-) TCTAC(C/T)GGACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C17orf80 Gene

Variant ID Type Subtype PubMed ID
nsv833534 CNV Loss 17160897
nsv2138 CNV Insertion 18451855

Relevant External Links for C17orf80 Gene

HapMap Linkage Disequilibrium report
C17orf80

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C17orf80 Gene

Disorders for C17orf80 Gene

(1) MalaCards Diseases for C17orf80 Gene

Search for C17orf80 Gene in MalaCards »

(1) University of Copenhagen DISEASES for C17orf80 Gene

genes like me logo Genes that share disorders with C17orf80: view

No data available for UniProtKB/Swiss-Prot for C17orf80 Gene

Publications for C17orf80 Gene

  1. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. From ORFeome to biology: a functional genomics pipeline. (PMID: 15489336) Wiemann S. … Poustka A. (Genome Res. 2004) 3
  4. The LIFEdb database in 2006. (PMID: 16381901) Mehrle A. … Wiemann S. (Nucleic Acids Res. 2006) 3
  5. Identification of genes related to Parkinson's disease using expressed sequence tags. (PMID: 17213182) Kim J.M. … Kim N.S. (DNA Res. 2006) 3

Products for C17orf80 Gene

Sources for C17orf80 Gene

Back to Top

Content