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Aliases for C17orf78 Gene

Aliases for C17orf78 Gene

  • Chromosome 17 Open Reading Frame 78 2 3

External Ids for C17orf78 Gene

Summaries for C17orf78 Gene

GeneCards Summary for C17orf78 Gene

C17orf78 (Chromosome 17 Open Reading Frame 78) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C17orf78 Gene

Genomics for C17orf78 Gene

Genomic Location for C17orf78 Gene

Start:
37,375,986 bp from pter
End:
37,392,858 bp from pter
Size:
16,873 bases
Orientation:
Plus strand

Genomic View for C17orf78 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C17orf78 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C17orf78 Gene

Regulatory Elements for C17orf78 Gene

Proteins for C17orf78 Gene

  • Protein details for C17orf78 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N4C9-CQ078_HUMAN
    Recommended name:
    Uncharacterized protein C17orf78
    Protein Accession:
    Q8N4C9
    Secondary Accessions:
    • Q8N8D2

    Protein attributes for C17orf78 Gene

    Size:
    275 amino acids
    Molecular mass:
    30555 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C17orf78 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C17orf78 Gene

Proteomics data for C17orf78 Gene at MOPED

Post-translational modifications for C17orf78 Gene

No Post-translational modifications

Other Protein References for C17orf78 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C17orf78 Gene

Domains for C17orf78 Gene

Protein Domains for C17orf78 Gene

ProtoNet:
genes like me logo Genes that share domains with C17orf78: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C17orf78 Gene

Function for C17orf78 Gene

miRNA for C17orf78 Gene

miRTarBase miRNAs that target C17orf78

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C17orf78 Gene

Localization for C17orf78 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C17orf78 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C17orf78 Gene COMPARTMENTS Subcellular localization image for C17orf78 gene
Compartment Confidence
plasma membrane 3
cytosol 2
cytoskeleton 1
extracellular 1
mitochondrion 1
nucleus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for C17orf78 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with C17orf78: view

Pathways for C17orf78 Gene

SuperPathways for C17orf78 Gene

No Data Available

Interacting Proteins for C17orf78 Gene

Gene Ontology (GO) - Biological Process for C17orf78 Gene

None

No data available for Pathways by source for C17orf78 Gene

Transcripts for C17orf78 Gene

mRNA/cDNA for C17orf78 Gene

(9) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C17orf78 Gene

Chromosome 17 open reading frame 78:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C17orf78 Gene

No ASD Table

Relevant External Links for C17orf78 Gene

GeneLoc Exon Structure for
C17orf78
ECgene alternative splicing isoforms for
C17orf78

Expression for C17orf78 Gene

mRNA expression in normal human tissues for C17orf78 Gene

mRNA differential expression in normal tissues according to GTEx for C17orf78 Gene

This gene is overexpressed in Small Intestine - Terminal Ileum (44.0).

SOURCE GeneReport for Unigene cluster for C17orf78 Gene Hs.439154

genes like me logo Genes that share expressions with C17orf78: view

Orthologs for C17orf78 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C17orf78 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C17H17orf78 36
  • 98.67 (n)
  • 97.82 (a)
cow
(Bos Taurus)
Mammalia C19H17orf78 36
  • 81.87 (n)
  • 69.71 (a)
dog
(Canis familiaris)
Mammalia C9H17orf78 36
  • 85.21 (n)
  • 76.36 (a)
mouse
(Mus musculus)
Mammalia Gm11437 36
  • 78.19 (n)
  • 64.34 (a)
Gm11437 16
rat
(Rattus norvegicus)
Mammalia LOC102552988 36
  • 77.57 (n)
  • 67.65 (a)
Species with no ortholog for C17orf78:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C17orf78 Gene

ENSEMBL:
Gene Tree for C17orf78 (if available)
TreeFam:
Gene Tree for C17orf78 (if available)

Paralogs for C17orf78 Gene

No data available for Paralogs for C17orf78 Gene

Variants for C17orf78 Gene

Sequence variations from dbSNP and Humsavar for C17orf78 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
VAR_034877 -

Structural Variations from Database of Genomic Variants (DGV) for C17orf78 Gene

Variant ID Type Subtype PubMed ID
dgv955e1 CNV Complex 17122850
esv32692 CNV Loss 17666407
esv2667392 CNV Deletion 23128226

Relevant External Links for C17orf78 Gene

HapMap Linkage Disequilibrium report
C17orf78

Disorders for C17orf78 Gene

Relevant External Links for C17orf78

Human Genome Epidemiology (HuGE) Navigator
C17orf78
genes like me logo Genes that share disorders with C17orf78: view

No data available for UniProtKB/Swiss-Prot for C17orf78 Gene

Publications for C17orf78 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 2 3 4
  2. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  3. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PMID: 19913121) Talmud P.J. … . (Am. J. Hum. Genet. 2009) 3
  4. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey S.D. … Anand S. (Diabetes Care 2010) 3
  5. GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer. (PMID: 23535730) Pharoah P.D. … Sellers T.A. (Nat. Genet. 2013) 3

Products for C17orf78 Gene

  • antibodies-online peptides for C17orf78
  • antibodies-online antibodies for C17orf78
  • antibodies-online kits for C17orf78

Sources for C17orf78 Gene

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