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Aliases for C17orf77 Gene

Aliases for C17orf77 Gene

  • Chromosome 17 Open Reading Frame 77 2 3

External Ids for C17orf77 Gene

Summaries for C17orf77 Gene

GeneCards Summary for C17orf77 Gene

C17orf77 (Chromosome 17 Open Reading Frame 77) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C17orf77 Gene

Genomics for C17orf77 Gene

Genomic Location for C17orf77 Gene

Start:
74,584,679 bp from pter
End:
74,594,209 bp from pter
Size:
9,531 bases
Orientation:
Plus strand

Genomic View for C17orf77 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C17orf77 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C17orf77 Gene

Regulatory Elements for C17orf77 Gene

Proteins for C17orf77 Gene

  • Protein details for C17orf77 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96MU5-CQ077_HUMAN
    Recommended name:
    Uncharacterized protein C17orf77
    Protein Accession:
    Q96MU5
    Secondary Accessions:

    Protein attributes for C17orf77 Gene

    Size:
    243 amino acids
    Molecular mass:
    26264 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AK056444; Type=Erroneous termination; Positions=207; Note=Translated as Cys.; Evidence={ECO:0000305};

neXtProt entry for C17orf77 Gene

Proteomics data for C17orf77 Gene at MOPED

Post-translational modifications for C17orf77 Gene

Other Protein References for C17orf77 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C17orf77 Gene

Domains for C17orf77 Gene

Protein Domains for C17orf77 Gene

ProtoNet:
genes like me logo Genes that share domains with C17orf77: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C17orf77 Gene

Function for C17orf77 Gene

miRNA for C17orf77 Gene

miRTarBase miRNAs that target C17orf77

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C17orf77 Gene

Localization for C17orf77 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C17orf77 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C17orf77 Gene COMPARTMENTS Subcellular localization image for C17orf77 gene
Compartment Confidence
extracellular 3
cytoskeleton 1
cytosol 1
nucleus 1

Gene Ontology (GO) - Cellular Components for C17orf77 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with C17orf77: view

Pathways for C17orf77 Gene

SuperPathways for C17orf77 Gene

No Data Available

Interacting Proteins for C17orf77 Gene

Gene Ontology (GO) - Biological Process for C17orf77 Gene

None

No data available for Pathways by source for C17orf77 Gene

Transcripts for C17orf77 Gene

mRNA/cDNA for C17orf77 Gene

(2) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C17orf77 Gene

Chromosome 17 open reading frame 77:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C17orf77 Gene

No ASD Table

Relevant External Links for C17orf77 Gene

GeneLoc Exon Structure for
C17orf77
ECgene alternative splicing isoforms for
C17orf77

Expression for C17orf77 Gene

mRNA expression in normal human tissues for C17orf77 Gene

mRNA differential expression in normal tissues according to GTEx for C17orf77 Gene

This gene is overexpressed in Breast - Mammary Tissue (26.1), Colon - Transverse (11.2), Small Intestine - Terminal Ileum (10.4), and Cervix - Ectocervix (5.2).

SOURCE GeneReport for Unigene cluster for C17orf77 Gene Hs.350775

genes like me logo Genes that share expressions with C17orf77: view

Orthologs for C17orf77 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C17orf77 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C17H17orf77 36
  • 98.12 (n)
  • 95.22 (a)
C17orf77 37
  • 95 (a)
OneToOne
Species with no ortholog for C17orf77:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C17orf77 Gene

ENSEMBL:
Gene Tree for C17orf77 (if available)
TreeFam:
Gene Tree for C17orf77 (if available)

Paralogs for C17orf77 Gene

No data available for Paralogs for C17orf77 Gene

Variants for C17orf77 Gene

Sequence variations from dbSNP and Humsavar for C17orf77 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs485049 -- 74,594,687(-) GAAGT(G/T)CAATG downstream-variant-500B
rs557536 -- 74,594,592(-) GCGTG(C/T)GCTGC downstream-variant-500B
rs72847154 -- 74,594,348(+) CCAGA(C/T)ATTAC downstream-variant-500B
rs138445789 -- 74,594,389(+) TGGGG(G/T)TCAGT downstream-variant-500B
rs150114852 -- 74,594,263(+) AGGGG(C/T)GTGGG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for C17orf77 Gene

Variant ID Type Subtype PubMed ID
dgv372n27 CNV Gain 19166990
nsv517569 CNV Gain+Loss 19592680
esv2751770 CNV Gain 17911159
esv33995 CNV Loss 17666407

Relevant External Links for C17orf77 Gene

HapMap Linkage Disequilibrium report
C17orf77

Disorders for C17orf77 Gene

No disorders were found for C17orf77 Gene.

No data available for UniProtKB/Swiss-Prot for C17orf77 Gene

Publications for C17orf77 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 4

Products for C17orf77 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate C17orf77
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for C17orf77
    • Block miRNA regulation of C17orf77 using miScript Target Protectors

    Sources for C17orf77 Gene

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