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Aliases for C17orf64 Gene

Aliases for C17orf64 Gene

  • Chromosome 17 Open Reading Frame 64 2 3

External Ids for C17orf64 Gene

Previous GeneCards Identifiers for C17orf64 Gene

  • GC17P055855
  • GC17P058469
  • GC17P053870

Summaries for C17orf64 Gene

GeneCards Summary for C17orf64 Gene

C17orf64 (Chromosome 17 Open Reading Frame 64) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C17orf64 Gene

Genomics for C17orf64 Gene

Regulatory Elements for C17orf64 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for C17orf64 Gene

Start:
60,392,429 bp from pter
End:
60,431,426 bp from pter
Size:
38,998 bases
Orientation:
Plus strand

Genomic View for C17orf64 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C17orf64 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C17orf64 Gene

Proteins for C17orf64 Gene

  • Protein details for C17orf64 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86WR6-CQ064_HUMAN
    Recommended name:
    Uncharacterized protein C17orf64
    Protein Accession:
    Q86WR6
    Secondary Accessions:
    • Q8IY87

    Protein attributes for C17orf64 Gene

    Size:
    236 amino acids
    Molecular mass:
    27182 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH36356.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=AAH48806.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

neXtProt entry for C17orf64 Gene

Proteomics data for C17orf64 Gene at MOPED

Post-translational modifications for C17orf64 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C17orf64 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C17orf64 Gene

Domains for C17orf64 Gene

Protein Domains for C17orf64 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C17orf64: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C17orf64 Gene

Function for C17orf64 Gene

Phenotypes for C17orf64 Gene

GenomeRNAi human phenotypes for C17orf64:
genes like me logo Genes that share phenotypes with C17orf64: view

Animal Model Products

CRISPR Products

miRNA for C17orf64 Gene

miRTarBase miRNAs that target C17orf64

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C17orf64

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for C17orf64 Gene

Localization for C17orf64 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C17orf64 Gene COMPARTMENTS Subcellular localization image for C17orf64 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C17orf64 Gene

Pathways for C17orf64 Gene

SuperPathways for C17orf64 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C17orf64 Gene

None

No data available for Pathways by source for C17orf64 Gene

Transcripts for C17orf64 Gene

mRNA/cDNA for C17orf64 Gene

Unigene Clusters for C17orf64 Gene

Chromosome 17 open reading frame 64:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C17orf64

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for C17orf64

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C17orf64 Gene

No ASD Table

Relevant External Links for C17orf64 Gene

GeneLoc Exon Structure for
C17orf64
ECgene alternative splicing isoforms for
C17orf64

Expression for C17orf64 Gene

mRNA expression in normal human tissues for C17orf64 Gene

mRNA differential expression in normal tissues according to GTEx for C17orf64 Gene

This gene is overexpressed in Testis (51.3).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for C17orf64 Gene

SOURCE GeneReport for Unigene cluster for C17orf64 Gene Hs.129312

genes like me logo Genes that share expressions with C17orf64: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for C17orf64 Gene

Orthologs for C17orf64 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C17orf64 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C17H17orf64 35
  • 99.01 (n)
  • 98.31 (a)
C17orf64 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C17orf64 36
  • 73 (a)
OneToOne
C19H17orf64 35
  • 82.04 (n)
  • 73.71 (a)
dog
(Canis familiaris)
Mammalia C17orf64 36
  • 76 (a)
OneToOne
C9H17orf64 35
  • 81.77 (n)
  • 75.64 (a)
mouse
(Mus musculus)
Mammalia 1700125H20Rik 35
  • 78.77 (n)
  • 73.5 (a)
1700125H20Rik 16
1700125H20Rik 36
  • 72 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C17orf64 36
  • 67 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C17orf64 36
  • 29 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1310166 35
  • 79.4 (n)
  • 75.54 (a)
chicken
(Gallus gallus)
Aves C17orf64 36
  • 61 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C17orf64 36
  • 52 (a)
OneToOne
Species with no ortholog for C17orf64:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C17orf64 Gene

ENSEMBL:
Gene Tree for C17orf64 (if available)
TreeFam:
Gene Tree for C17orf64 (if available)

Paralogs for C17orf64 Gene

Selected SIMAP similar genes for C17orf64 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with C17orf64: view

No data available for Paralogs for C17orf64 Gene

Variants for C17orf64 Gene

Sequence variations from dbSNP and Humsavar for C17orf64 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs1355250 -- 60,428,238(+) AATTT(C/G)TCGCA intron-variant
rs1986411 -- 60,428,633(-) ggtgc(A/C)tgcct intron-variant
rs3760332 -- 60,431,257(-) GGTTC(A/G)GTCTC synonymous-codon, reference, stop-lost
rs6503966 -- 60,425,499(+) ATTTG(C/T)GGGAA intron-variant
rs6503967 -- 60,426,085(+) CCGGT(C/G)TGCTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C17orf64 Gene

Variant ID Type Subtype PubMed ID
nsv519929 CNV Loss 19592680
nsv521420 CNV Loss 19592680

Relevant External Links for C17orf64 Gene

HapMap Linkage Disequilibrium report
C17orf64

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C17orf64 Gene

Disorders for C17orf64 Gene

Relevant External Links for C17orf64

Genetic Association Database (GAD)
C17orf64
genes like me logo Genes that share disorders with C17orf64: view

No data available for UniProtKB/Swiss-Prot for C17orf64 Gene

Publications for C17orf64 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  3. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 4

Products for C17orf64 Gene

Sources for C17orf64 Gene

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