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Aliases for C17orf62 Gene

Aliases for C17orf62 Gene

  • Chromosome 17 Open Reading Frame 62 2 3

External Ids for C17orf62 Gene

Summaries for C17orf62 Gene

GeneCards Summary for C17orf62 Gene

C17orf62 (Chromosome 17 Open Reading Frame 62) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C17orf62 Gene

Genomics for C17orf62 Gene

Genomic Location for C17orf62 Gene

Start:
82,442,586 bp from pter
End:
82,450,831 bp from pter
Size:
8,246 bases
Orientation:
Minus strand

Genomic View for C17orf62 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C17orf62 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C17orf62 Gene

Regulatory Elements for C17orf62 Gene

Proteins for C17orf62 Gene

  • Protein details for C17orf62 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BQA9-CQ062_HUMAN
    Recommended name:
    Uncharacterized protein C17orf62
    Protein Accession:
    Q9BQA9
    Secondary Accessions:
    • E1B6X3
    • Q96NR1

    Protein attributes for C17orf62 Gene

    Size:
    187 amino acids
    Molecular mass:
    20774 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB70818.1; Type=Miscellaneous discrepancy; Note=Wrong choice of frame.; Evidence={ECO:0000305};

    Alternative splice isoforms for C17orf62 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C17orf62 Gene

Proteomics data for C17orf62 Gene at MOPED

Post-translational modifications for C17orf62 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for C17orf62 Gene

Domains for C17orf62 Gene

Protein Domains for C17orf62 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with C17orf62: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C17orf62 Gene

Function for C17orf62 Gene

Gene Ontology (GO) - Molecular Function for C17orf62 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 20195357
genes like me logo Genes that share ontologies with C17orf62: view

Phenotypes for C17orf62 Gene

genes like me logo Genes that share phenotypes with C17orf62: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C17orf62 Gene

Localization for C17orf62 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C17orf62 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C17orf62 Gene COMPARTMENTS Subcellular localization image for C17orf62 gene
Compartment Confidence
mitochondrion 3
cytosol 1
endoplasmic reticulum 1
golgi apparatus 1
nucleus 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for C17orf62 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with C17orf62: view

Pathways for C17orf62 Gene

SuperPathways for C17orf62 Gene

No Data Available

Interacting Proteins for C17orf62 Gene

Gene Ontology (GO) - Biological Process for C17orf62 Gene

None

No data available for Pathways by source for C17orf62 Gene

Transcripts for C17orf62 Gene

Unigene Clusters for C17orf62 Gene

Chromosome 17 open reading frame 62:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C17orf62 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b · 3c ^ 4a · 4b · 4c ^ 5a · 5b ^ 6a · 6b · 6c ^ 7a · 7b ^ 8a · 8b · 8c ^ 9a · 9b · 9c · 9d ^ 10 ^
SP1: - - - - - - - - - - - - -
SP2: - - - - - - - - - - - - - - -
SP3: - - - - - - - -
SP4: - - - - - - - - - - - - - - - -
SP5: - - - - - - - - - - - - - - - -
SP6: - - - - - - - - - - - - -
SP7: - - - - - - -
SP8: - - - - - - - - -
SP9: - - - - - - - - - - -
SP10: - - - - - -
SP11: - - - - -
SP12: - - - - - - - - - - - - - - - - - -
SP13: - - - - - - - - - - - -
SP14: - - - - -
SP15: - - - - - - - - - -
SP16: - - - - - - - - - - - - - - - - -
SP17: - - - - - - - - - - - - -
SP18: - - -
SP19: -
SP20: - - - - - - - - - - - - - -
SP21: - - - - - - -
SP22:
SP23: -

ExUns: 11a · 11b · 11c · 11d · 11e · 11f
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:
SP15:
SP16:
SP17:
SP18:
SP19:
SP20:
SP21:
SP22:
SP23:

Relevant External Links for C17orf62 Gene

GeneLoc Exon Structure for
C17orf62
ECgene alternative splicing isoforms for
C17orf62

Expression for C17orf62 Gene

mRNA expression in normal human tissues for C17orf62 Gene

mRNA differential expression in normal tissues according to GTEx for C17orf62 Gene

This gene is overexpressed in Whole Blood (12.5).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C17orf62 Gene

SOURCE GeneReport for Unigene cluster for C17orf62 Gene Hs.163113

genes like me logo Genes that share expressions with C17orf62: view

Orthologs for C17orf62 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C17orf62 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C17H17orf62 36
  • 100 (n)
  • 100 (a)
cow
(Bos Taurus)
Mammalia C17orf62 37
  • 91 (a)
OneToOne
C19H17orf62 36
  • 87.7 (n)
  • 90.91 (a)
dog
(Canis familiaris)
Mammalia C17orf62 37
  • 88 (a)
OneToOne
LOC608239 36
  • 87.52 (n)
  • 87.63 (a)
mouse
(Mus musculus)
Mammalia BC017643 36
  • 86.99 (n)
  • 88.77 (a)
BC017643 16
BC017643 37
  • 89 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C17orf62 37
  • 78 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C17orf62 37
  • 74 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC619574 36
  • 86.45 (n)
  • 89.3 (a)
chicken
(Gallus gallus)
Aves C17orf62 37
  • 68 (a)
OneToOne
C18H17ORF62 36
  • 71.09 (n)
  • 70.72 (a)
lizard
(Anolis carolinensis)
Reptilia C17orf62 37
  • 68 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c17orf62 36
  • 67.77 (n)
  • 68.13 (a)
zebrafish
(Danio rerio)
Actinopterygii C12H17orf62 (1 of 2) 37
  • 54 (a)
OneToMany
C12H17orf62 (2 of 2) 37
  • 53 (a)
OneToMany
zgc:91940 36
  • 62.04 (n)
  • 62.78 (a)
Species with no ortholog for C17orf62:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C17orf62 Gene

ENSEMBL:
Gene Tree for C17orf62 (if available)
TreeFam:
Gene Tree for C17orf62 (if available)

Paralogs for C17orf62 Gene

genes like me logo Genes that share paralogs with C17orf62: view

No data available for Paralogs for C17orf62 Gene

Variants for C17orf62 Gene

Sequence variations from dbSNP and Humsavar for C17orf62 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs2291394 -- 82,446,018(-) CCCAG(C/T)GGCCA intron-variant
rs2306758 -- 82,444,070(-) TGCCT(C/T)GAGAG synonymous-codon, reference, nc-transcript-variant
rs3751913 -- 82,447,676(-) GCACC(A/G)GGGAG intron-variant
rs4789688 -- 82,450,074(+) TCACG(G/T)AGTTC intron-variant, upstream-variant-2KB, nc-transcript-variant, utr-variant-5-prime
rs7210573 -- 82,451,911(+) gcggg(C/T)gctca upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C17orf62 Gene

Variant ID Type Subtype PubMed ID
nsv428351 CNV Gain 18775914
dgv3332n71 CNV Loss 21882294
nsv909134 CNV Loss 21882294
esv21913 CNV Gain+Loss 19812545
dgv3353n71 CNV Loss 21882294
dgv3354n71 CNV Loss 21882294
nsv469561 CNV Complex 16826518
nsv909223 CNV Loss 21882294
nsv909228 CNV Gain 21882294
nsv909229 CNV Loss 21882294
dgv3360n71 CNV Loss 21882294
nsv909231 CNV Loss 21882294
nsv833574 CNV Gain 17160897
dgv3361n71 CNV Loss 21882294
dgv3362n71 CNV Loss 21882294
esv2716503 CNV Deletion 23290073

Relevant External Links for C17orf62 Gene

HapMap Linkage Disequilibrium report
C17orf62

Disorders for C17orf62 Gene

Relevant External Links for C17orf62

Genetic Association Database (GAD)
C17orf62
genes like me logo Genes that share disorders with C17orf62: view

No data available for UniProtKB/Swiss-Prot for C17orf62 Gene

Publications for C17orf62 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. A genome-wide association study identifies protein quantitative trait loci (pQTLs). (PMID: 18464913) Melzer D. … Ferrucci L. (PLoS Genet. 2008) 3 49
  4. A comprehensive resource of interacting protein regions for refining human transcription factor networks. (PMID: 20195357) Miyamoto-Sato E. … Yanagawa H. (PLoS ONE 2010) 3
  5. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PMID: 21139048) Danielsen J.M. … Nielsen M.L. (Mol. Cell Proteomics 2011) 3

Products for C17orf62 Gene

Sources for C17orf62 Gene

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