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Aliases for C17orf51 Gene

Aliases for C17orf51 Gene

  • Chromosome 17 Open Reading Frame 51 2 3

External Ids for C17orf51 Gene

Previous GeneCards Identifiers for C17orf51 Gene

  • GC17M021377
  • GC17M020633
  • GC17M021428

Summaries for C17orf51 Gene

GeneCards Summary for C17orf51 Gene

C17orf51 (Chromosome 17 Open Reading Frame 51) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C17orf51 Gene

Genomics for C17orf51 Gene

Regulatory Elements for C17orf51 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for C17orf51 Gene

Start:
21,439,899 bp from pter
End:
21,574,458 bp from pter
Size:
134,560 bases
Orientation:
Minus strand

Genomic View for C17orf51 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C17orf51 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C17orf51 Gene

Proteins for C17orf51 Gene

  • Protein details for C17orf51 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MQB3-CQ051_HUMAN
    Recommended name:
    Uncharacterized protein C17orf51
    Protein Accession:
    A8MQB3
    Secondary Accessions:
    • B2RN29
    • B5MCL4

    Protein attributes for C17orf51 Gene

    Size:
    221 amino acids
    Molecular mass:
    24325 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C17orf51 Gene

Proteomics data for C17orf51 Gene at MOPED

Post-translational modifications for C17orf51 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C17orf51 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C17orf51 Gene

Domains for C17orf51 Gene

Protein Domains for C17orf51 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C17orf51: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C17orf51 Gene

Function for C17orf51 Gene

Animal Model Products

CRISPR Products

miRNA for C17orf51 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C17orf51

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C17orf51 Gene

Localization for C17orf51 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C17orf51 Gene COMPARTMENTS Subcellular localization image for C17orf51 gene
Compartment Confidence
nucleus 3
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C17orf51 Gene

Pathways for C17orf51 Gene

SuperPathways for C17orf51 Gene

No Data Available

Interacting Proteins for C17orf51 Gene

Gene Ontology (GO) - Biological Process for C17orf51 Gene

None

No data available for Pathways by source for C17orf51 Gene

Transcripts for C17orf51 Gene

Unigene Clusters for C17orf51 Gene

Chromosome 17 open reading frame 51:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C17orf51

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for C17orf51
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C17orf51 Gene

No ASD Table

Relevant External Links for C17orf51 Gene

GeneLoc Exon Structure for
C17orf51
ECgene alternative splicing isoforms for
C17orf51

Expression for C17orf51 Gene

mRNA expression in normal human tissues for C17orf51 Gene

mRNA differential expression in normal tissues according to GTEx for C17orf51 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (4.8) and Brain - Cerebellum (4.2).

SOURCE GeneReport for Unigene cluster for C17orf51 Gene Hs.514016

genes like me logo Genes that share expressions with C17orf51: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for C17orf51 Gene

Orthologs for C17orf51 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C17orf51 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C17H17orf51 35
  • 99.55 (n)
  • 99.55 (a)
C17orf51 36
  • 100 (a)
OneToOne
Species with no ortholog for C17orf51:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C17orf51 Gene

ENSEMBL:
Gene Tree for C17orf51 (if available)
TreeFam:
Gene Tree for C17orf51 (if available)

Paralogs for C17orf51 Gene

Selected SIMAP similar genes for C17orf51 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for C17orf51 Gene

genes like me logo Genes that share paralogs with C17orf51: view

No data available for Paralogs for C17orf51 Gene

Variants for C17orf51 Gene

Sequence variations from dbSNP and Humsavar for C17orf51 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs1657658 -- 21,444,023(+) tacat(C/T)ggcac intron-variant
rs1657659 -- 21,444,154(+) AATTG(A/C)AGAGA intron-variant
rs1714866 -- 21,444,284(-) aatga(A/G)aagtg intron-variant
rs1714867 -- 21,444,243(-) gcaaa(A/G)caacc intron-variant
rs1714868 -- 21,443,957(-) acact(A/G)aacaa intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C17orf51 Gene

Variant ID Type Subtype PubMed ID
nsv907889 CNV Gain 21882294
dgv937e1 CNV Complex 17122850
esv2660756 CNV Deletion 23128226
dgv363n27 CNV Gain 19166990
esv34477 CNV Gain 17911159
dgv3106n71 CNV Gain 21882294
nsv907894 CNV Loss 21882294
nsv907897 CNV Gain 21882294
esv32532 CNV Loss 17666407
nsv907903 CNV Gain+Loss 21882294
esv2751620 CNV Loss 17911159
nsv517456 CNV Gain+Loss 19592680
nsv817756 CNV Gain 17921354
nsv833401 CNV Gain 17160897
dgv3110n71 CNV Gain 21882294
nsv2009 CNV Loss 18451855
nsv907913 CNV Gain 21882294
nsv9517 CNV Loss 18304495

Relevant External Links for C17orf51 Gene

HapMap Linkage Disequilibrium report
C17orf51

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C17orf51 Gene

Disorders for C17orf51 Gene

Relevant External Links for C17orf51

Genetic Association Database (GAD)
C17orf51
genes like me logo Genes that share disorders with C17orf51: view

No data available for UniProtKB/Swiss-Prot for C17orf51 Gene

Publications for C17orf51 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 3 4
  4. Genome-wide association analysis identifies three psoriasis susceptibility loci. (PMID: 20953189) Stuart P.E. … Elder J.T. (Nat. Genet. 2010) 48
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C17orf51 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate C17orf51
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for C17orf51
    • Block miRNA regulation of C17orf51 using miScript Target Protectors

    Sources for C17orf51 Gene

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