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Aliases for C17orf50 Gene

Aliases for C17orf50 Gene

  • Chromosome 17 Open Reading Frame 50 2 3

External Ids for C17orf50 Gene

Summaries for C17orf50 Gene

GeneCards Summary for C17orf50 Gene

C17orf50 (Chromosome 17 Open Reading Frame 50) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C17orf50 Gene

Genomics for C17orf50 Gene

Genomic Location for C17orf50 Gene

Start:
35,760,871 bp from pter
End:
35,765,079 bp from pter
Size:
4,209 bases
Orientation:
Plus strand

Genomic View for C17orf50 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C17orf50 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C17orf50 Gene

Regulatory Elements for C17orf50 Gene

Proteins for C17orf50 Gene

  • Protein details for C17orf50 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WW18-CQ050_HUMAN
    Recommended name:
    Uncharacterized protein C17orf50
    Protein Accession:
    Q8WW18
    Secondary Accessions:
    • Q6Q621

    Protein attributes for C17orf50 Gene

    Size:
    174 amino acids
    Molecular mass:
    19346 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C17orf50 Gene

Proteomics data for C17orf50 Gene at MOPED

Post-translational modifications for C17orf50 Gene

No Post-translational modifications

Other Protein References for C17orf50 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C17orf50 Gene

Domains for C17orf50 Gene

Protein Domains for C17orf50 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with C17orf50: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C17orf50 Gene

Function for C17orf50 Gene

Phenotypes for C17orf50 Gene

GenomeRNAi human phenotypes for C17orf50:
genes like me logo Genes that share phenotypes with C17orf50: view

miRNA for C17orf50 Gene

miRTarBase miRNAs that target C17orf50

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for C17orf50 Gene

Localization for C17orf50 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C17orf50 Gene COMPARTMENTS Subcellular localization image for C17orf50 gene
Compartment Confidence
nucleus 3
extracellular 2
cytosol 1

No data available for Gene Ontology (GO) - Cellular Components for C17orf50 Gene

Pathways for C17orf50 Gene

SuperPathways for C17orf50 Gene

No Data Available

Interacting Proteins for C17orf50 Gene

Selected Interacting proteins: Q8WW18-CQ050_HUMAN for C17orf50 Gene via I2D

Symbol External ID(s) Details
PIWIL1

Gene Ontology (GO) - Biological Process for C17orf50 Gene

None

No data available for Pathways by source for C17orf50 Gene

Transcripts for C17orf50 Gene

mRNA/cDNA for C17orf50 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(16) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C17orf50 Gene

Chromosome 17 open reading frame 50:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C17orf50 Gene

ExUns: 1 ^ 2a · 2b ^ 3a · 3b
SP1:
SP2: -

Relevant External Links for C17orf50 Gene

GeneLoc Exon Structure for
C17orf50
ECgene alternative splicing isoforms for
C17orf50

Expression for C17orf50 Gene

mRNA expression in normal human tissues for C17orf50 Gene

mRNA differential expression in normal tissues according to GTEx for C17orf50 Gene

This gene is overexpressed in Testis (46.4).

SOURCE GeneReport for Unigene cluster for C17orf50 Gene Hs.127194

genes like me logo Genes that share expressions with C17orf50: view

Orthologs for C17orf50 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C17orf50 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C17H17orf50 36
  • 99.04 (n)
  • 98.28 (a)
cow
(Bos Taurus)
Mammalia C19H17orf50 36
  • 75.83 (n)
  • 69.59 (a)
dog
(Canis familiaris)
Mammalia C9H17orf50 36
  • 88.38 (n)
  • 85.32 (a)
mouse
(Mus musculus)
Mammalia 1700020L24Rik 36
  • 74.95 (n)
  • 72.78 (a)
1700020L24Rik 16
rat
(Rattus norvegicus)
Mammalia LOC100912283 36
  • 72.64 (n)
  • 64.16 (a)
Species with no ortholog for C17orf50:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C17orf50 Gene

ENSEMBL:
Gene Tree for C17orf50 (if available)
TreeFam:
Gene Tree for C17orf50 (if available)

Paralogs for C17orf50 Gene

No data available for Paralogs for C17orf50 Gene

Variants for C17orf50 Gene

Sequence variations from dbSNP and Humsavar for C17orf50 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
VAR_050899 -

Relevant External Links for C17orf50 Gene

HapMap Linkage Disequilibrium report
C17orf50

No data available for Structural Variations from Database of Genomic Variants (DGV) for C17orf50 Gene

Disorders for C17orf50 Gene

Relevant External Links for C17orf50

Human Genome Epidemiology (HuGE) Navigator
C17orf50
genes like me logo Genes that share disorders with C17orf50: view

No data available for UniProtKB/Swiss-Prot for C17orf50 Gene

Publications for C17orf50 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3
  3. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PMID: 19913121) Talmud P.J. … . (Am. J. Hum. Genet. 2009) 3
  4. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey S.D. … Anand S. (Diabetes Care 2010) 3

Products for C17orf50 Gene

Sources for C17orf50 Gene

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