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Aliases for C17orf47 Gene

Aliases for C17orf47 Gene

  • Chromosome 17 Open Reading Frame 47 2 3

External Ids for C17orf47 Gene

Previous GeneCards Identifiers for C17orf47 Gene

  • GC17M053974
  • GC17M056618
  • GC17M051979

Summaries for C17orf47 Gene

GeneCards Summary for C17orf47 Gene

C17orf47 (Chromosome 17 Open Reading Frame 47) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C17orf47 Gene

Genomics for C17orf47 Gene

Regulatory Elements for C17orf47 Gene

Genomic Location for C17orf47 Gene

Start:
58,541,587 bp from pter
End:
58,544,372 bp from pter
Size:
2,786 bases
Orientation:
Minus strand

Genomic View for C17orf47 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C17orf47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C17orf47 Gene

Proteins for C17orf47 Gene

  • Protein details for C17orf47 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NEP4-CQ047_HUMAN
    Recommended name:
    Uncharacterized protein C17orf47
    Protein Accession:
    Q8NEP4
    Secondary Accessions:
    • Q8N821

    Protein attributes for C17orf47 Gene

    Size:
    570 amino acids
    Molecular mass:
    63111 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C17orf47 Gene

Proteomics data for C17orf47 Gene at MOPED

Post-translational modifications for C17orf47 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C17orf47 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C17orf47 Gene

Domains for C17orf47 Gene

Protein Domains for C17orf47 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C17orf47: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C17orf47 Gene

Function for C17orf47 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C17orf47 Gene

Localization for C17orf47 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C17orf47 Gene COMPARTMENTS Subcellular localization image for C17orf47 gene
Compartment Confidence
cytosol 2
nucleus 2
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C17orf47 Gene

Pathways for C17orf47 Gene

SuperPathways for C17orf47 Gene

No Data Available

Interacting Proteins for C17orf47 Gene

Gene Ontology (GO) - Biological Process for C17orf47 Gene

None

No data available for Pathways by source for C17orf47 Gene

Transcripts for C17orf47 Gene

mRNA/cDNA for C17orf47 Gene

(2) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(2) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C17orf47 Gene

Chromosome 17 open reading frame 47:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C17orf47

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for C17orf47
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C17orf47 Gene

No ASD Table

Relevant External Links for C17orf47 Gene

GeneLoc Exon Structure for
C17orf47
ECgene alternative splicing isoforms for
C17orf47

Expression for C17orf47 Gene

mRNA expression in normal human tissues for C17orf47 Gene

mRNA differential expression in normal tissues according to GTEx for C17orf47 Gene

This gene is overexpressed in Testis (16.4).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C17orf47 Gene

SOURCE GeneReport for Unigene cluster for C17orf47 Gene Hs.646574

genes like me logo Genes that share expressions with C17orf47: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for C17orf47 Gene

Orthologs for C17orf47 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C17orf47 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C17H17orf47 35
  • 99.12 (n)
  • 98.25 (a)
C17orf47 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C17orf47 36
  • 52 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C17orf47 36
  • 34 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm11492 16
Gm11492 36
  • 53 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C17orf47 36
  • 31 (a)
OneToOne
Species with no ortholog for C17orf47:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C17orf47 Gene

ENSEMBL:
Gene Tree for C17orf47 (if available)
TreeFam:
Gene Tree for C17orf47 (if available)

Paralogs for C17orf47 Gene

No data available for Paralogs for C17orf47 Gene

Variants for C17orf47 Gene

Sequence variations from dbSNP and Humsavar for C17orf47 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
VAR_032122 -
VAR_032123 -
VAR_032124 -

Structural Variations from Database of Genomic Variants (DGV) for C17orf47 Gene

Variant ID Type Subtype PubMed ID
nsv908641 CNV Loss 21882294

Relevant External Links for C17orf47 Gene

HapMap Linkage Disequilibrium report
C17orf47

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C17orf47 Gene

Disorders for C17orf47 Gene

No disorders were found for C17orf47 Gene.

No data available for UniProtKB/Swiss-Prot for C17orf47 Gene

Publications for C17orf47 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. Meta-analysis identifies four new loci associated with testicular germ cell tumor. (PMID: 23666239) Chung C.C. … Nathanson K.L. (Nat. Genet. 2013) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  5. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 4

Products for C17orf47 Gene

Sources for C17orf47 Gene

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