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Aliases for C17orf112 Gene

Aliases for C17orf112 Gene

  • Chromosome 17 Open Reading Frame 112 2 3 5

External Ids for C17orf112 Gene

Previous GeneCards Identifiers for C17orf112 Gene

  • GC17P051065

Summaries for C17orf112 Gene

GeneCards Summary for C17orf112 Gene

C17orf112 (Chromosome 17 Open Reading Frame 112) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C17orf112 Gene

Genomics for C17orf112 Gene

Regulatory Elements for C17orf112 Gene

Enhancers for C17orf112 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around C17orf112 on UCSC Golden Path with GeneCards custom track

Genomic Location for C17orf112 Gene

Chromosome:
17
Start:
52,983,991 bp from pter
End:
52,987,658 bp from pter
Size:
3,668 bases
Orientation:
Plus strand

Genomic View for C17orf112 Gene

Genes around C17orf112 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C17orf112 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C17orf112 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C17orf112 Gene

Proteins for C17orf112 Gene

  • Protein details for C17orf112 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    F2Z3M2-CQ112_HUMAN
    Recommended name:
    Uncharacterized protein C17orf112
    Protein Accession:
    F2Z3M2

    Protein attributes for C17orf112 Gene

    Size:
    114 amino acids
    Molecular mass:
    12668 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C17orf112 Gene

Post-translational modifications for C17orf112 Gene

No Post-translational modifications

Other Protein References for C17orf112 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for C17orf112 Gene

Domains & Families for C17orf112 Gene

Protein Domains for C17orf112 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C17orf112: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C17orf112 Gene

Function for C17orf112 Gene

Animal Model Products

CRISPR Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C17orf112 Gene

Localization for C17orf112 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C17orf112 Gene COMPARTMENTS Subcellular localization image for C17orf112 gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C17orf112 Gene

Pathways & Interactions for C17orf112 Gene

SuperPathways for C17orf112 Gene

No Data Available

Interacting Proteins for C17orf112 Gene

Gene Ontology (GO) - Biological Process for C17orf112 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C17orf112 Gene

Drugs & Compounds for C17orf112 Gene

No Compound Related Data Available

Transcripts for C17orf112 Gene

mRNA/cDNA for C17orf112 Gene

(2) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C17orf112 Gene

Chromosome 17 open reading frame 112:
Representative Sequences:

CRISPR Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C17orf112 Gene

No ASD Table

Relevant External Links for C17orf112 Gene

GeneLoc Exon Structure for
C17orf112
ECgene alternative splicing isoforms for
C17orf112

Expression for C17orf112 Gene

mRNA expression in normal human tissues for C17orf112 Gene

mRNA differential expression in normal tissues according to GTEx for C17orf112 Gene

This gene is overexpressed in Testis (x52.9).

NURSA nuclear receptor signaling pathways regulating expression of C17orf112 Gene:

C17orf112

SOURCE GeneReport for Unigene cluster for C17orf112 Gene:

Hs.146556
genes like me logo Genes that share expression patterns with C17orf112: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for C17orf112 Gene

Orthologs for C17orf112 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C17orf112 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C17H17orf112 34
  • 98.54 (n)
  • 97.37 (a)
C17orf112 35
  • 97 (a)
OneToOne
Species where no ortholog for C17orf112 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C17orf112 Gene

ENSEMBL:
Gene Tree for C17orf112 (if available)
TreeFam:
Gene Tree for C17orf112 (if available)

Paralogs for C17orf112 Gene

No data available for Paralogs for C17orf112 Gene

Variants for C17orf112 Gene

Sequence variations from dbSNP and Humsavar for C17orf112 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1858464 -- 52,987,897(-) TGTCT(C/T)ACTGG downstream-variant-500B
rs1877504 -- 52,983,275(-) TACTC(A/G)ACTGC upstream-variant-2KB
rs1877505 -- 52,982,832(-) AACCA(C/G/T)AAATT upstream-variant-2KB
rs2271474 -- 52,986,581(-) GGTGT(C/G)GAAAT intron-variant
rs1512867 -- 52,984,354(-) AGTGA(A/C)TAATG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C17orf112 Gene

Variant ID Type Subtype PubMed ID
dgv3264n100 CNV loss 25217958
dgv5691n54 CNV loss 21841781
dgv5692n54 CNV loss 21841781
dgv5693n54 CNV loss 21841781
esv2758695 CNV loss 17122850
esv3640792 CNV loss 21293372
nsv2091 CNV insertion 18451855
nsv457834 CNV loss 19166990
nsv523579 CNV loss 19592680
nsv528447 CNV loss 19592680
nsv828046 CNV loss 20364138
nsv9571 CNV loss 18304495

Variation tolerance for C17orf112 Gene

Gene Damage Index Score: 0.00; 0.05% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C17orf112 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C17orf112

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C17orf112 Gene

Disorders for C17orf112 Gene

Relevant External Links for C17orf112

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C17orf112

No disorders were found for C17orf112 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C17orf112 Gene

Publications for C17orf112 Gene

  1. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 4 65
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 65

Products for C17orf112 Gene

Sources for C17orf112 Gene

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