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Aliases for C17orf107 Gene

Aliases for C17orf107 Gene

  • Chromosome 17 Open Reading Frame 107 2 3 5

External Ids for C17orf107 Gene

Previous GeneCards Identifiers for C17orf107 Gene

  • GC17P004745
  • GC17P004802

Summaries for C17orf107 Gene

GeneCards Summary for C17orf107 Gene

C17orf107 (Chromosome 17 Open Reading Frame 107) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C17orf107 Gene

Genomics for C17orf107 Gene

Regulatory Elements for C17orf107 Gene

Promoters for C17orf107 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around C17orf107 on UCSC Golden Path with GeneCards custom track

Genomic Location for C17orf107 Gene

Chromosome:
17
Start:
4,899,418 bp from pter
End:
4,905,329 bp from pter
Size:
5,912 bases
Orientation:
Plus strand

Genomic View for C17orf107 Gene

Genes around C17orf107 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C17orf107 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C17orf107 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C17orf107 Gene

Proteins for C17orf107 Gene

  • Protein details for C17orf107 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZR85-CQ107_HUMAN
    Recommended name:
    Uncharacterized protein C17orf107
    Protein Accession:
    Q6ZR85

    Protein attributes for C17orf107 Gene

    Size:
    190 amino acids
    Molecular mass:
    19931 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C17orf107 Gene

Proteomics data for C17orf107 Gene at MOPED

Post-translational modifications for C17orf107 Gene

No Post-translational modifications

Other Protein References for C17orf107 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C17orf107 Gene

Domains & Families for C17orf107 Gene

Protein Domains for C17orf107 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C17orf107: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C17orf107 Gene

Function for C17orf107 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C17orf107 Gene

Localization for C17orf107 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C17orf107 Gene COMPARTMENTS Subcellular localization image for C17orf107 gene
Compartment Confidence
cytosol 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C17orf107 Gene

Pathways & Interactions for C17orf107 Gene

SuperPathways for C17orf107 Gene

No Data Available

Interacting Proteins for C17orf107 Gene

Gene Ontology (GO) - Biological Process for C17orf107 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C17orf107 Gene

Drugs & Compounds for C17orf107 Gene

No Compound Related Data Available

Transcripts for C17orf107 Gene

mRNA/cDNA for C17orf107 Gene

(2) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C17orf107 Gene

Chromosome 17 open reading frame 107:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C17orf107 Gene

No ASD Table

Relevant External Links for C17orf107 Gene

GeneLoc Exon Structure for
C17orf107
ECgene alternative splicing isoforms for
C17orf107

Expression for C17orf107 Gene

mRNA expression in normal human tissues for C17orf107 Gene

mRNA expression in normal human tissues for C17orf107 Gene

SOURCE GeneReport for Unigene cluster for C17orf107 Gene Hs.579243

genes like me logo Genes that share expression patterns with C17orf107: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for C17orf107 Gene

Orthologs for C17orf107 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C17orf107 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C17H17orf107 35
  • 97.72 (n)
  • 98.42 (a)
C17orf107 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C17orf107 36
  • 81 (a)
OneToOne
C19H17orf107 35
  • 86.63 (n)
  • 81.32 (a)
dog
(Canis familiaris)
Mammalia C5H17orf107 35
  • 81.03 (n)
  • 76.24 (a)
mouse
(Mus musculus)
Mammalia 4930544D05Rik 35
  • 77.78 (n)
  • 73.21 (a)
4930544D05Rik 36
  • 70 (a)
OneToOne
4930544D05Rik 16
rat
(Rattus norvegicus)
Mammalia LOC687707 35
  • 77.54 (n)
  • 73.37 (a)
Species with no ortholog for C17orf107:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C17orf107 Gene

ENSEMBL:
Gene Tree for C17orf107 (if available)
TreeFam:
Gene Tree for C17orf107 (if available)

Paralogs for C17orf107 Gene

No data available for Paralogs for C17orf107 Gene

Variants for C17orf107 Gene

Sequence variations from dbSNP and Humsavar for C17orf107 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs149543201 -- 4,905,754(+) TACTC(A/G)GGAGG downstream-variant-500B
rs182904904 -- 4,905,743(+) GTAAT(C/T)CCAGC downstream-variant-500B
rs190351623 -- 4,905,516(+) GCTAC(A/G)ATCAC downstream-variant-500B
rs187274959 -- 4,905,391(+) ACAAA(A/G)ATAAA downstream-variant-500B
rs539736654 -- 4,905,818(+) ATCGT(A/G)CCACT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for C17orf107 Gene

Variant ID Type Subtype PubMed ID
nsv833347 CNV Loss 17160897
nsv833349 CNV Loss 17160897
nsv509647 CNV Insertion 20534489
nsv907619 CNV Loss 21882294
nsv907620 CNV Loss 21882294
nsv833350 CNV Loss 17160897

Variation tolerance for C17orf107 Gene

Gene Damage Index Score: 7.78; 83.33% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C17orf107 Gene

HapMap Linkage Disequilibrium report
C17orf107

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C17orf107 Gene

Disorders for C17orf107 Gene

Relevant External Links for C17orf107

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C17orf107

No disorders were found for C17orf107 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C17orf107 Gene

Publications for C17orf107 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 67

Products for C17orf107 Gene

Sources for C17orf107 Gene

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