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Aliases for C17orf107 Gene

Aliases for C17orf107 Gene

  • Chromosome 17 Open Reading Frame 107 2 3 5

External Ids for C17orf107 Gene

Previous GeneCards Identifiers for C17orf107 Gene

  • GC17P004745
  • GC17P004802

Summaries for C17orf107 Gene

GeneCards Summary for C17orf107 Gene

C17orf107 (Chromosome 17 Open Reading Frame 107) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C17orf107 Gene

Genomics for C17orf107 Gene

Regulatory Elements for C17orf107 Gene

Enhancers for C17orf107 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G004856 1.5 Ensembl ENCODE dbSUPER 21.8 -40.6 -40643 5.3 FOXA2 ATF1 MLX ARID4B DMAP1 ZNF48 YY1 ETS1 TCF12 GATA2 CHRNE C17orf107 ZFP3 MINK1 PLD2 ARRB2 LOC101559451 PELP1 RPS12P29 ENO3
GH17G004709 1.5 FANTOM5 ENCODE 19.6 -188.1 -188100 4.1 HDGF PKNOX1 FOXA2 MLX ARNT WRNIP1 ARID4B SIN3A DMAP1 ZNF2 ARRB2 ZMYND15 C17orf107 CXCL16 MINK1 GC17M004721
GH17G004847 1.7 FANTOM5 Ensembl ENCODE dbSUPER 14.2 -49.8 -49787 4.4 PKNOX1 ZBTB40 RAD21 RFX5 RARA RCOR1 FOS THAP11 CEBPB NR2F2 CHRNE ENO3 PFN1 ZMYND15 ARRB2 C17orf107 PLD2 CXCL16 RPS12P29 LOC101559451
GH17G004842 1.5 FANTOM5 Ensembl ENCODE dbSUPER 13.7 -54.9 -54918 3.4 PKNOX1 HLF CEBPB GATA2 ZNF341 PBX2 EED ETV6 PRDM10 NFE2 CHRNE ARRB2 ZMYND15 CXCL16 C17orf107 PLD2 ENO3 PSMB6 RPS12P29 GLTPD2
GH17G004832 1.7 FANTOM5 ENCODE dbSUPER 9 -64.8 -64802 4.2 HDGF FOXA2 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 CHRNE LOC100130950 ZNF232 ZNF594 ENSG00000263272 ZMYND15 CXCL16 DERL2 CAMTA2 ENSG00000263164
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C17orf107 on UCSC Golden Path with GeneCards custom track

Promoters for C17orf107 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000090557 182 801 CTCF JUN ZBTB40 ZNF316 EGR1 MAFK CREM EZH2 MAFG CEBPB

Genomic Location for C17orf107 Gene

Chromosome:
17
Start:
4,899,418 bp from pter
End:
4,905,329 bp from pter
Size:
5,912 bases
Orientation:
Plus strand

Genomic View for C17orf107 Gene

Genes around C17orf107 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C17orf107 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C17orf107 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C17orf107 Gene

Proteins for C17orf107 Gene

  • Protein details for C17orf107 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZR85-CQ107_HUMAN
    Recommended name:
    Uncharacterized protein C17orf107
    Protein Accession:
    Q6ZR85

    Protein attributes for C17orf107 Gene

    Size:
    190 amino acids
    Molecular mass:
    19931 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C17orf107 Gene

Post-translational modifications for C17orf107 Gene

No Post-translational modifications

Other Protein References for C17orf107 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C17orf107 Gene

Domains & Families for C17orf107 Gene

Protein Domains for C17orf107 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C17orf107: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C17orf107 Gene

Function for C17orf107 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C17orf107 Gene

Localization for C17orf107 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C17orf107 gene
Compartment Confidence
peroxisome 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C17orf107 Gene

Pathways & Interactions for C17orf107 Gene

SuperPathways for C17orf107 Gene

No Data Available

Interacting Proteins for C17orf107 Gene

Gene Ontology (GO) - Biological Process for C17orf107 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C17orf107 Gene

Drugs & Compounds for C17orf107 Gene

No Compound Related Data Available

Transcripts for C17orf107 Gene

mRNA/cDNA for C17orf107 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C17orf107 Gene

Chromosome 17 open reading frame 107:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for C17orf107 Gene

No ASD Table

Relevant External Links for C17orf107 Gene

GeneLoc Exon Structure for
C17orf107
ECgene alternative splicing isoforms for
C17orf107

Expression for C17orf107 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C17orf107 Gene

mRNA expression in normal human tissues for C17orf107 Gene

NURSA nuclear receptor signaling pathways regulating expression of C17orf107 Gene:

C17orf107

SOURCE GeneReport for Unigene cluster for C17orf107 Gene:

Hs.579243
genes like me logo Genes that share expression patterns with C17orf107: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C17orf107 Gene

Orthologs for C17orf107 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C17orf107 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C17orf107 35
  • 98 (a)
OneToOne
C17H17orf107 34
  • 97.72 (n)
cow
(Bos Taurus)
Mammalia C19H17orf107 34
  • 86.63 (n)
C17orf107 35
  • 81 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C5H17orf107 34
  • 81.03 (n)
mouse
(Mus musculus)
Mammalia 4930544D05Rik 34 16 35
  • 77.78 (n)
rat
(Rattus norvegicus)
Mammalia LOC687707 34
  • 77.54 (n)
Species where no ortholog for C17orf107 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C17orf107 Gene

ENSEMBL:
Gene Tree for C17orf107 (if available)
TreeFam:
Gene Tree for C17orf107 (if available)

Paralogs for C17orf107 Gene

No data available for Paralogs for C17orf107 Gene

Variants for C17orf107 Gene

Sequence variations from dbSNP and Humsavar for C17orf107 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs121909510 Pathogenic 4,900,860(-) CCCAG(A/C)CCGTC intron-variant, reference, missense, utr-variant-3-prime
rs121909511 Pathogenic 4,900,845(-) TGTTC(C/T)TCATT intron-variant, reference, missense, utr-variant-3-prime
rs121909512 Pathogenic 4,902,010(-) GCCTC(C/T)GGCCA nc-transcript-variant, reference, missense, utr-variant-3-prime
rs121909513 Pathogenic 4,902,311(-) ATTAC(C/G/T)GACTC nc-transcript-variant, reference, missense, utr-variant-3-prime
rs121909514 Pathogenic 4,901,932(-) TTTCC(G/T)GTGGG nc-transcript-variant, reference, missense, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for C17orf107 Gene

Variant ID Type Subtype PubMed ID
dgv3088n100 CNV gain 25217958
esv3572365 CNV gain 25503493
nsv509647 CNV insertion 20534489
nsv574273 CNV gain 21841781
nsv574275 CNV gain 21841781
nsv833347 CNV loss 17160897
nsv833349 CNV loss 17160897
nsv833350 CNV loss 17160897

Variation tolerance for C17orf107 Gene

Gene Damage Index Score: 7.78; 83.33% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C17orf107 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C17orf107

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C17orf107 Gene

Disorders for C17orf107 Gene

Relevant External Links for C17orf107

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C17orf107

No disorders were found for C17orf107 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C17orf107 Gene

Publications for C17orf107 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 64

Products for C17orf107 Gene

Sources for C17orf107 Gene

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