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Aliases for C17orf102 Gene

Aliases for C17orf102 Gene

  • Chromosome 17 Open Reading Frame 102 2 3

External Ids for C17orf102 Gene

Summaries for C17orf102 Gene

GeneCards Summary for C17orf102 Gene

C17orf102 (Chromosome 17 Open Reading Frame 102) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C17orf102 Gene

Genomics for C17orf102 Gene

Genomic Location for C17orf102 Gene

Start:
34,574,123 bp from pter
End:
34,579,369 bp from pter
Size:
5,247 bases
Orientation:
Minus strand

Genomic View for C17orf102 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C17orf102 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C17orf102 Gene

Regulatory Elements for C17orf102 Gene

Proteins for C17orf102 Gene

  • Protein details for C17orf102 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A2RUQ5-CQ102_HUMAN
    Recommended name:
    Uncharacterized protein C17orf102
    Protein Accession:
    A2RUQ5
    Secondary Accessions:
    • A5PKX0
    • Q6ZTB3

    Protein attributes for C17orf102 Gene

    Size:
    167 amino acids
    Molecular mass:
    17761 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C17orf102 Gene

Proteomics data for C17orf102 Gene at MOPED

Post-translational modifications for C17orf102 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C17orf102 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C17orf102 Gene

Domains for C17orf102 Gene

Protein Domains for C17orf102 Gene

ProtoNet:
genes like me logo Genes that share domains with C17orf102: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C17orf102 Gene

Function for C17orf102 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C17orf102 Gene

Localization for C17orf102 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C17orf102 Gene COMPARTMENTS Subcellular localization image for C17orf102 gene
Compartment Confidence
mitochondrion 2
cytosol 1
extracellular 1
nucleus 1

No data available for Gene Ontology (GO) - Cellular Components for C17orf102 Gene

Pathways for C17orf102 Gene

SuperPathways for C17orf102 Gene

No Data Available

Interacting Proteins for C17orf102 Gene

Gene Ontology (GO) - Biological Process for C17orf102 Gene

None

No data available for Pathways by source for C17orf102 Gene

Transcripts for C17orf102 Gene

mRNA/cDNA for C17orf102 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C17orf102 Gene

Chromosome 17 open reading frame 102:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C17orf102 Gene

No ASD Table

Relevant External Links for C17orf102 Gene

GeneLoc Exon Structure for
C17orf102
ECgene alternative splicing isoforms for
C17orf102

Expression for C17orf102 Gene

mRNA expression in normal human tissues for C17orf102 Gene

mRNA differential expression in normal tissues according to GTEx for C17orf102 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (10.3), Brain - Cortex (9.5), Brain - Anterior cingulate cortex (BA24) (6.1), Brain - Hypothalamus (5.0), Brain - Cerebellar Hemisphere (4.3), and Brain - Cerebellum (4.3).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C17orf102 Gene

SOURCE GeneReport for Unigene cluster for C17orf102 Gene Hs.514090

genes like me logo Genes that share expressions with C17orf102: view

Orthologs for C17orf102 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C17orf102 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C17H17orf102 36
  • 99.4 (n)
  • 98.2 (a)
C17orf102 37
  • 98 (a)
OneToOne
Species with no ortholog for C17orf102:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C17orf102 Gene

ENSEMBL:
Gene Tree for C17orf102 (if available)
TreeFam:
Gene Tree for C17orf102 (if available)

Paralogs for C17orf102 Gene

No data available for Paralogs for C17orf102 Gene

Variants for C17orf102 Gene

Sequence variations from dbSNP and Humsavar for C17orf102 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs887230 - 34,577,567(-) GAGCA(A/G)GACAA missense, reference
rs887231 -- 34,577,461(-) CACTT(C/T)GCTCA utr-variant-3-prime
rs1014250 -- 34,575,608(-) CAGCT(C/T)AGATT utr-variant-3-prime
rs1019131 -- 34,573,943(-) CCTTG(C/T)GGAGG downstream-variant-500B
rs4795007 -- 34,576,280(+) GAAAG(C/T)TCTTG utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for C17orf102 Gene

Variant ID Type Subtype PubMed ID
nsv519297 CNV Gain 19592680
esv33292 CNV Gain 17666407

Relevant External Links for C17orf102 Gene

HapMap Linkage Disequilibrium report
C17orf102

Disorders for C17orf102 Gene

No disorders were found for C17orf102 Gene.

No data available for UniProtKB/Swiss-Prot for C17orf102 Gene

Publications for C17orf102 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C17orf102 Gene

Sources for C17orf102 Gene

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