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Aliases for C17orf100 Gene

Aliases for C17orf100 Gene

  • Chromosome 17 Open Reading Frame 100 2 3 5
  • Uncharacterized Protein C17orf100 3
  • HCG1985469 3

External Ids for C17orf100 Gene

Previous GeneCards Identifiers for C17orf100 Gene

  • GC17P006497
  • GC17P006564

Summaries for C17orf100 Gene

GeneCards Summary for C17orf100 Gene

C17orf100 (Chromosome 17 Open Reading Frame 100) is a Protein Coding gene.

Additional gene information for C17orf100 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C17orf100 Gene

Genomics for C17orf100 Gene

Regulatory Elements for C17orf100 Gene

Enhancers for C17orf100 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H006699 1 ENCODE 10.8 +48.9 48850 1 FOXA2 ATF1 MLX ARID4B YY1 TCF12 SLC30A9 SP5 REST PPARG XAF1 MED31 C17orf100 FBXO39 SLC13A5 GC17M006685
GH17H006913 1 Ensembl ENCODE 10.3 +262.4 262424 0 CTCF RB1 RAD21 CC2D1A POLR2A ZNF143 SMC3 CREM MAZ ZNF740 ALOX12 ALOX12-AS1 RNASEK RNASEK-C17orf49 MIR195 BCL6B SLC16A11 C17orf100 MED31 SLC13A5
GH17H006599 0.9 Ensembl ENCODE 11 -52.1 -52098 1 L3MBTL2 MAFG MAX MNT ZNF316 FOXK2 SMARCA4 IKZF1 NFE2 EMSY KIAA0753 PITPNM3 TXNDC17 C17orf100 MED31 SLC13A5 GC17M006601 RNA5SP435 GC17M006460
GH17H006843 0.6 ENCODE 10.2 +191.7 191739 0 CTCF ZNF654 RFX1 REST RAD21 ZNF143 SMC3 ZNF24 ALOX12 ALOX12-AS1 RNASEK-C17orf49 RNASEK SLC13A5 MED31 C17orf100 XAF1 SLC16A11 ALOX12P2
GH17H006485 0.5 dbSUPER 10.3 -164.1 -164136 4 ZFP3 SCRT2 ZBTB40 PIMREG PITPNM3 C17orf100 MED31 PIR55314 PIR59656
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C17orf100 on UCSC Golden Path with GeneCards custom track

Promoters for C17orf100 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000090741 -418 1401 HDGF FOXA2 PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1
ENSR00000282248 582 201 PKNOX1 ATF1 MLX ZNF133 FEZF1 DMAP1 GLI4 ZNF2 SLC30A9 GLIS2

Genomic Location for C17orf100 Gene

Chromosome:
17
Start:
6,651,718 bp from pter
End:
6,693,202 bp from pter
Size:
41,485 bases
Orientation:
Plus strand

Genomic View for C17orf100 Gene

Genes around C17orf100 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C17orf100 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C17orf100 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C17orf100 Gene

Proteins for C17orf100 Gene

  • Protein details for C17orf100 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MU93-CQ100_HUMAN
    Recommended name:
    Uncharacterized protein C17orf100
    Protein Accession:
    A8MU93

    Protein attributes for C17orf100 Gene

    Size:
    164 amino acids
    Molecular mass:
    18001 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BC038956; Type=Frameshift; Positions=104; Evidence={ECO:0000305};

neXtProt entry for C17orf100 Gene

Post-translational modifications for C17orf100 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C17orf100 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C17orf100 Gene

Domains & Families for C17orf100 Gene

Gene Families for C17orf100 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for C17orf100 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C17orf100: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C17orf100 Gene

Function for C17orf100 Gene

Phenotypes From GWAS Catalog for C17orf100 Gene

Phenotypes for C17orf100 Gene

genes like me logo Genes that share phenotypes with C17orf100: view

Animal Model Products

CRISPR Products

miRNA for C17orf100 Gene

miRTarBase miRNAs that target C17orf100

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for C17orf100
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C17orf100 Gene

Localization for C17orf100 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C17orf100 gene
Compartment Confidence
nucleus 3

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytokinetic bridge (1)
  • Cytosol (1)
  • Nucleus (1)
See all subcellular structures

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C17orf100 Gene

Pathways & Interactions for C17orf100 Gene

SuperPathways for C17orf100 Gene

No Data Available

Interacting Proteins for C17orf100 Gene

Gene Ontology (GO) - Biological Process for C17orf100 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C17orf100 Gene

Drugs & Compounds for C17orf100 Gene

No Compound Related Data Available

Transcripts for C17orf100 Gene

mRNA/cDNA for C17orf100 Gene

Unigene Clusters for C17orf100 Gene

Chromosome 17 open reading frame 100:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for C17orf100
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for C17orf100 Gene

No ASD Table

Relevant External Links for C17orf100 Gene

GeneLoc Exon Structure for
C17orf100
ECgene alternative splicing isoforms for
C17orf100

Expression for C17orf100 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C17orf100 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C17orf100 Gene



NURSA nuclear receptor signaling pathways regulating expression of C17orf100 Gene:

C17orf100

SOURCE GeneReport for Unigene cluster for C17orf100 Gene:

Hs.262480
genes like me logo Genes that share expression patterns with C17orf100: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C17orf100 Gene

Orthologs for C17orf100 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C17orf100 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C17H17orf100 33
  • 98.87 (n)
cow
(Bos Taurus)
Mammalia C19H17orf100 33
  • 82.77 (n)
mouse
(Mus musculus)
Mammalia 4930563E22Rik 33 16
  • 79.58 (n)
rat
(Rattus norvegicus)
Mammalia LOC100912483 33
  • 77.4 (n)
Species where no ortholog for C17orf100 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C17orf100 Gene

ENSEMBL:
Gene Tree for C17orf100 (if available)
TreeFam:
Gene Tree for C17orf100 (if available)

Paralogs for C17orf100 Gene

No data available for Paralogs for C17orf100 Gene

Variants for C17orf100 Gene

Sequence variations from dbSNP and Humsavar for C17orf100 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000372565 -- 6,650,580(+) CCTTC(G/T)AAATC intron-variant, upstream-variant-2KB
rs1000769204 -- 6,650,698(+) GTGGG(A/C)CACTA intron-variant, upstream-variant-2KB
rs1002785708 -- 6,653,647(+) AGGAA(C/T)AGAAA downstream-variant-500B, upstream-variant-2KB
rs1004149025 -- 6,650,972(+) AAAAA(A/T)TAGCC intron-variant, upstream-variant-2KB
rs1005366114 -- 6,650,248(+) GTGTA(A/C)TGTCA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C17orf100 Gene

Variant ID Type Subtype PubMed ID
nsv574278 CNV gain 21841781

Variation tolerance for C17orf100 Gene

Gene Damage Index Score: 0.84; 17.63% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C17orf100 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C17orf100

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C17orf100 Gene

Disorders for C17orf100 Gene

Relevant External Links for C17orf100

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C17orf100

No disorders were found for C17orf100 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C17orf100 Gene

Publications for C17orf100 Gene

  1. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody MC … Nusbaum C (Nature 2006) 4 60
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60
  4. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 60

Products for C17orf100 Gene

Sources for C17orf100 Gene

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