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Aliases for C17orf100 Gene

Aliases for C17orf100 Gene

  • Chromosome 17 Open Reading Frame 100 2 3 5
  • HCG1985469 3

External Ids for C17orf100 Gene

Previous GeneCards Identifiers for C17orf100 Gene

  • GC17P006497
  • GC17P006564

Summaries for C17orf100 Gene

GeneCards Summary for C17orf100 Gene

C17orf100 (Chromosome 17 Open Reading Frame 100) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C17orf100 Gene

Genomics for C17orf100 Gene

Regulatory Elements for C17orf100 Gene

Promoters for C17orf100 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around C17orf100 on UCSC Golden Path with GeneCards custom track

Genomic Location for C17orf100 Gene

Chromosome:
17
Start:
6,651,739 bp from pter
End:
6,653,298 bp from pter
Size:
1,560 bases
Orientation:
Plus strand

Genomic View for C17orf100 Gene

Genes around C17orf100 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C17orf100 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C17orf100 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C17orf100 Gene

Proteins for C17orf100 Gene

  • Protein details for C17orf100 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MU93-CQ100_HUMAN
    Recommended name:
    Uncharacterized protein C17orf100
    Protein Accession:
    A8MU93

    Protein attributes for C17orf100 Gene

    Size:
    164 amino acids
    Molecular mass:
    18001 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BC038956; Type=Frameshift; Positions=104; Evidence={ECO:0000305};

neXtProt entry for C17orf100 Gene

Proteomics data for C17orf100 Gene at MOPED

Post-translational modifications for C17orf100 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C17orf100 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C17orf100 Gene

Domains & Families for C17orf100 Gene

Protein Domains for C17orf100 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C17orf100: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C17orf100 Gene

Function for C17orf100 Gene

Phenotypes for C17orf100 Gene

genes like me logo Genes that share phenotypes with C17orf100: view

Animal Model Products

CRISPR Products

miRNA for C17orf100 Gene

miRTarBase miRNAs that target C17orf100

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C17orf100 Gene

Localization for C17orf100 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C17orf100 Gene COMPARTMENTS Subcellular localization image for C17orf100 gene
Compartment Confidence
nucleus 3

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C17orf100 Gene

Pathways & Interactions for C17orf100 Gene

SuperPathways for C17orf100 Gene

No Data Available

Interacting Proteins for C17orf100 Gene

Gene Ontology (GO) - Biological Process for C17orf100 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C17orf100 Gene

Drugs & Compounds for C17orf100 Gene

No Compound Related Data Available

Transcripts for C17orf100 Gene

mRNA/cDNA for C17orf100 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(57) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C17orf100 Gene

Chromosome 17 open reading frame 100:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C17orf100 Gene

No ASD Table

Relevant External Links for C17orf100 Gene

GeneLoc Exon Structure for
C17orf100
ECgene alternative splicing isoforms for
C17orf100

Expression for C17orf100 Gene

mRNA expression in normal human tissues for C17orf100 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C17orf100 Gene



SOURCE GeneReport for Unigene cluster for C17orf100 Gene Hs.262480

genes like me logo Genes that share expression patterns with C17orf100: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for C17orf100 Gene

Orthologs for C17orf100 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C17orf100 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C17H17orf100 35
  • 98.87 (n)
  • 98.31 (a)
cow
(Bos Taurus)
Mammalia C19H17orf100 35
  • 82.77 (n)
  • 67.8 (a)
mouse
(Mus musculus)
Mammalia 4930563E22Rik 35
  • 79.58 (n)
  • 72.07 (a)
4930563E22Rik 16
rat
(Rattus norvegicus)
Mammalia LOC100912483 35
  • 77.4 (n)
  • 66.95 (a)
Species with no ortholog for C17orf100:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C17orf100 Gene

ENSEMBL:
Gene Tree for C17orf100 (if available)
TreeFam:
Gene Tree for C17orf100 (if available)

Paralogs for C17orf100 Gene

No data available for Paralogs for C17orf100 Gene

Variants for C17orf100 Gene

Sequence variations from dbSNP and Humsavar for C17orf100 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs574790389 -- 6,650,214(+) CCCAG(-/TACGCAATTATATCTA)TATAC upstream-variant-2KB

Variation tolerance for C17orf100 Gene

Gene Damage Index Score: 0.84; 17.63% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C17orf100 Gene

HapMap Linkage Disequilibrium report
C17orf100

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for C17orf100 Gene

Disorders for C17orf100 Gene

Relevant External Links for C17orf100

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C17orf100

No disorders were found for C17orf100 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C17orf100 Gene

Publications for C17orf100 Gene

  1. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 4 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3

Products for C17orf100 Gene

Sources for C17orf100 Gene

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