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Aliases for C16orf97 Gene

Aliases for C16orf97 Gene

  • Chromosome 16 Open Reading Frame 97 2 3 5

External Ids for C16orf97 Gene

Summaries for C16orf97 Gene

GeneCards Summary for C16orf97 Gene

C16orf97 (Chromosome 16 Open Reading Frame 97) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C16orf97 Gene

Genomics for C16orf97 Gene

Regulatory Elements for C16orf97 Gene

Enhancers for C16orf97 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F053051 1.4 FANTOM5 ENCODE 16.2 -974.3 -974288 2.0 HDGF PKNOX1 ARNT ZNF493 ZNF133 SIN3A YBX1 GLI4 DMAP1 YY1 ENSG00000260393 LOC105371263 ENSG00000260478 C16orf97 ENSG00000261470 LINC00919 LOC102467079 LOC100421174 RPGRIP1L LOC105371267
GH16F053040 1.2 FANTOM5 ENCODE 16.2 -964.9 -964931 5.2 ATF1 PKNOX1 ARID4B NFXL1 YBX1 RARA ZNF366 CREM ZNF263 MCM3 LOC105371263 ENSG00000260393 ENSG00000260478 C16orf97 ENSG00000261470 LINC00919 LOC102467079 RPGRIP1L LOC105371267 LOC100128523
GH16F051670 0.3 FANTOM5 4.7 +407.7 407650 0.0 C16orf97 RN7SKP142 HNRNPA1P48
GH16F051641 0.3 FANTOM5 1.3 +437.1 437052 0.3 SALL1 C16orf97 HNRNPA1P48 PIR35026
GH16F052068 0.7 ENCODE 0.4 +9.9 9894 0.1 CTCF ZNF654 RFX1 HLF CEBPB CEBPG RAD21 RFX3 SMARCA4 CEBPA C16orf97 GC16P052023
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C16orf97 on UCSC Golden Path with GeneCards custom track

Genomic Location for C16orf97 Gene

Chromosome:
16
Start:
52,005,487 bp from pter
End:
52,078,517 bp from pter
Size:
73,031 bases
Orientation:
Minus strand

Genomic View for C16orf97 Gene

Genes around C16orf97 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C16orf97 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C16orf97 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C16orf97 Gene

Proteins for C16orf97 Gene

  • Protein details for C16orf97 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    H3BN30-CP097_HUMAN
    Recommended name:
    Uncharacterized protein C16orf97
    Protein Accession:
    H3BN30

    Protein attributes for C16orf97 Gene

    Size:
    126 amino acids
    Molecular mass:
    14216 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C16orf97 Gene

Post-translational modifications for C16orf97 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C16orf97 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for C16orf97 Gene

Domains & Families for C16orf97 Gene

Protein Domains for C16orf97 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C16orf97: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C16orf97 Gene

Function for C16orf97 Gene

Phenotypes for C16orf97 Gene

GenomeRNAi human phenotypes for C16orf97:
genes like me logo Genes that share phenotypes with C16orf97: view

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C16orf97 Gene

Localization for C16orf97 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C16orf97 Gene

Pathways & Interactions for C16orf97 Gene

SuperPathways for C16orf97 Gene

No Data Available

Interacting Proteins for C16orf97 Gene

Gene Ontology (GO) - Biological Process for C16orf97 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C16orf97 Gene

Transcripts for C16orf97 Gene

mRNA/cDNA for C16orf97 Gene

(2) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(9) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C16orf97 Gene

Chromosome 16 open reading frame 97:
Representative Sequences:

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C16orf97 Gene

No ASD Table

Relevant External Links for C16orf97 Gene

GeneLoc Exon Structure for
C16orf97
ECgene alternative splicing isoforms for
C16orf97

Expression for C16orf97 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C16orf97 Gene

mRNA differential expression in normal tissues according to GTEx for C16orf97 Gene

This gene is overexpressed in Testis (x53.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C16orf97 Gene



NURSA nuclear receptor signaling pathways regulating expression of C16orf97 Gene:

C16orf97

SOURCE GeneReport for Unigene cluster for C16orf97 Gene:

Hs.534669
genes like me logo Genes that share expression patterns with C16orf97: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for C16orf97 Gene

Orthologs for C16orf97 Gene

Evolution for C16orf97 Gene

ENSEMBL:
Gene Tree for C16orf97 (if available)
TreeFam:
Gene Tree for C16orf97 (if available)

No data available for Orthologs for C16orf97 Gene

Paralogs for C16orf97 Gene

No data available for Paralogs for C16orf97 Gene

Variants for C16orf97 Gene

Sequence variations from dbSNP and Humsavar for C16orf97 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs10678241 -- 52,029,170(+) TCTTC(-/TTTTT/TTTTTT/TTTTTTT)TTTTT intron-variant
rs1102395 -- 52,031,882(-) TCTAG(C/G)CTGTG intron-variant
rs1102396 -- 52,033,707(+) GGATG(A/C)AATCA intron-variant
rs1102399 -- 52,037,712(-) AGTTA(A/G)AGTTA intron-variant
rs1102986 -- 52,065,174(+) cctaa(C/G)tgttt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C16orf97 Gene

Variant ID Type Subtype PubMed ID
nsv827650 CNV loss 20364138
nsv1058257 CNV gain 25217958
esv34024 CNV loss 18971310

Variation tolerance for C16orf97 Gene

Gene Damage Index Score: 1.69; 32.17% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C16orf97 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C16orf97

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C16orf97 Gene

Disorders for C16orf97 Gene

Relevant External Links for C16orf97

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C16orf97

No disorders were found for C16orf97 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C16orf97 Gene

Publications for C16orf97 Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 4 64
  2. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for C16orf97 Gene

Sources for C16orf97 Gene

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