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Aliases for C16orf96 Gene

Aliases for C16orf96 Gene

  • Chromosome 16 Open Reading Frame 96 2 3

External Ids for C16orf96 Gene

Summaries for C16orf96 Gene

GeneCards Summary for C16orf96 Gene

C16orf96 (Chromosome 16 Open Reading Frame 96) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C16orf96 Gene

Genomics for C16orf96 Gene

Genomic Location for C16orf96 Gene

Start:
4,556,329 bp from pter
End:
4,600,714 bp from pter
Size:
44,386 bases
Orientation:
Plus strand

Genomic View for C16orf96 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C16orf96 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C16orf96 Gene

No data available for Regulatory Elements for C16orf96 Gene

Proteins for C16orf96 Gene

  • Protein details for C16orf96 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NNT2-CP096_HUMAN
    Recommended name:
    Uncharacterized protein C16orf96
    Protein Accession:
    A6NNT2
    Secondary Accessions:
    • C9JH24

    Protein attributes for C16orf96 Gene

    Size:
    1141 amino acids
    Molecular mass:
    125041 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C16orf96 Gene

Proteomics data for C16orf96 Gene at MOPED

Post-translational modifications for C16orf96 Gene

No Post-translational modifications

Other Protein References for C16orf96 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C16orf96 Gene

Domains for C16orf96 Gene

Protein Domains for C16orf96 Gene

ProtoNet:
genes like me logo Genes that share domains with C16orf96: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C16orf96 Gene

Function for C16orf96 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C16orf96 Gene

Localization for C16orf96 Gene

No data available for Gene Ontology (GO) - Cellular Components for C16orf96 Gene

Pathways for C16orf96 Gene

SuperPathways for C16orf96 Gene

No Data Available

Interacting Proteins for C16orf96 Gene

Gene Ontology (GO) - Biological Process for C16orf96 Gene

None

No data available for Pathways by source for C16orf96 Gene

Transcripts for C16orf96 Gene

mRNA/cDNA for C16orf96 Gene

(4) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C16orf96 Gene

Chromosome 16 open reading frame 96:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C16orf96 Gene

No ASD Table

Relevant External Links for C16orf96 Gene

GeneLoc Exon Structure for
C16orf96
ECgene alternative splicing isoforms for
C16orf96

Expression for C16orf96 Gene

mRNA expression in normal human tissues for C16orf96 Gene

mRNA differential expression in normal tissues according to GTEx for C16orf96 Gene

This gene is overexpressed in Testis (28.0).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C16orf96 Gene

SOURCE GeneReport for Unigene cluster for C16orf96 Gene Hs.684212

genes like me logo Genes that share expressions with C16orf96: view

Orthologs for C16orf96 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C16orf96 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C16H16orf96 36
  • 98.57 (n)
  • 97.05 (a)
C16orf96 37
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C16orf96 37
  • 50 (a)
OneToOne
C6H16orf96 36
  • 76.27 (n)
  • 66.05 (a)
mouse
(Mus musculus)
Mammalia 4930562C15Rik 36
  • 66.02 (n)
  • 53.7 (a)
4930562C15Rik 16
4930562C15Rik 37
  • 47 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C16orf96 37
  • 36 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC100361104 36
  • 66.14 (n)
  • 55.51 (a)
chicken
(Gallus gallus)
Aves LOC768955 36
  • 50.66 (n)
  • 33.33 (a)
Species with no ortholog for C16orf96:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C16orf96 Gene

ENSEMBL:
Gene Tree for C16orf96 (if available)
TreeFam:
Gene Tree for C16orf96 (if available)

Paralogs for C16orf96 Gene

No data available for Paralogs for C16orf96 Gene

Variants for C16orf96 Gene

Sequence variations from dbSNP and Humsavar for C16orf96 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs753481 -- 4,594,683(-) GGTCC(C/T)GGGTT intron-variant
rs841179 -- 4,584,869(+) tttca(C/T)catgt intron-variant
rs841180 -- 4,584,875(+) catgt(C/T)ggcta intron-variant
rs841181 -- 4,586,134(+) gggtg(C/T)cagtg intron-variant
rs841204 -- 4,560,566(+) TTGGC(A/G)GAATA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C16orf96 Gene

Variant ID Type Subtype PubMed ID
nsv905234 CNV Loss 21882294
dgv2587n71 CNV Loss 21882294
dgv2588n71 CNV Loss 21882294
dgv2589n71 CNV Loss 21882294
esv32558 CNV Gain 17666407
nsv905243 CNV Loss 21882294

Relevant External Links for C16orf96 Gene

HapMap Linkage Disequilibrium report
C16orf96

Disorders for C16orf96 Gene

No disorders were found for C16orf96 Gene.

No data available for UniProtKB/Swiss-Prot for C16orf96 Gene

Publications for C16orf96 Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 3 4
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3

Products for C16orf96 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate C16orf96
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for C16orf96
    • Block miRNA regulation of C16orf96 using miScript Target Protectors

    Sources for C16orf96 Gene

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