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Aliases for C16orf93 Gene

Aliases for C16orf93 Gene

  • Chromosome 16 Open Reading Frame 93 2 3

External Ids for C16orf93 Gene

Previous GeneCards Identifiers for C16orf93 Gene

  • GC16M030677
  • GC16M030678
  • GC16M028331

Summaries for C16orf93 Gene

GeneCards Summary for C16orf93 Gene

C16orf93 (Chromosome 16 Open Reading Frame 93) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C16orf93 Gene

Genomics for C16orf93 Gene

Regulatory Elements for C16orf93 Gene

Genomic Location for C16orf93 Gene

Start:
30,757,423 bp from pter
End:
30,762,710 bp from pter
Size:
5,288 bases
Orientation:
Minus strand

Genomic View for C16orf93 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C16orf93 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C16orf93 Gene

Proteins for C16orf93 Gene

  • Protein details for C16orf93 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A1A4V9-CP093_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein C16orf93
    Protein Accession:
    A1A4V9
    Secondary Accessions:
    • A1A4V8
    • F5GX13
    • Q569G2

    Protein attributes for C16orf93 Gene

    Size:
    331 amino acids
    Molecular mass:
    37921 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C16orf93 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C16orf93 Gene

Proteomics data for C16orf93 Gene at MOPED

Post-translational modifications for C16orf93 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C16orf93 Gene

No data available for DME Specific Peptides for C16orf93 Gene

Domains for C16orf93 Gene

Protein Domains for C16orf93 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for C16orf93 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C16orf93: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C16orf93 Gene

Function for C16orf93 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C16orf93 Gene

Localization for C16orf93 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C16orf93 Gene COMPARTMENTS Subcellular localization image for C16orf93 gene
Compartment Confidence
cytosol 2
extracellular 2
nucleus 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C16orf93 Gene

Pathways for C16orf93 Gene

SuperPathways for C16orf93 Gene

No Data Available

Interacting Proteins for C16orf93 Gene

Gene Ontology (GO) - Biological Process for C16orf93 Gene

None

No data available for Pathways by source for C16orf93 Gene

Transcripts for C16orf93 Gene

Unigene Clusters for C16orf93 Gene

Chromosome 16 open reading frame 93:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C16orf93 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b ^ 7a · 7b · 7c · 7d · 7e ^ 8 ^ 9 ^ 10a · 10b
SP1: - - - - -
SP2: - - -
SP3: - - - - - -
SP4:
SP5:
SP6: -
SP7: - - -
SP8: - - - - - - - - - -

Relevant External Links for C16orf93 Gene

GeneLoc Exon Structure for
C16orf93
ECgene alternative splicing isoforms for
C16orf93

Expression for C16orf93 Gene

mRNA expression in normal human tissues for C16orf93 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C16orf93 Gene

This gene is overexpressed in Pituitary (5.9) and Testis (4.1).

SOURCE GeneReport for Unigene cluster for C16orf93 Gene Hs.724010

genes like me logo Genes that share expressions with C16orf93: view

No data available for Protein expression and mRNA Expression by UniProt/SwissProt for C16orf93 Gene

Orthologs for C16orf93 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C16orf93 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C16H16orf93 35
  • 98.99 (n)
  • 98.79 (a)
C16H16orf93 36
  • 91 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C16orf93 36
  • 77 (a)
OneToOne
C25H16orf93 35
  • 82.28 (n)
  • 77.04 (a)
dog
(Canis familiaris)
Mammalia C6H16orf93 35
  • 81.97 (n)
  • 77.2 (a)
C6H16orf93 36
  • 76 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm166 35
  • 77.1 (n)
  • 72.34 (a)
Gm166 16
Gm166 36
  • 71 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C16orf93 36
  • 56 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC691909 35
  • 77.24 (n)
  • 72.26 (a)
chicken
(Gallus gallus)
Aves C16orf93 36
  • 35 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C16orf93 36
  • 50 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100493957 35
  • 51.6 (n)
  • 38.4 (a)
zebrafish
(Danio rerio)
Actinopterygii C12H16orf93 36
  • 31 (a)
OneToOne
LOC100151516 35
  • 48.58 (n)
  • 35.47 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 39 (a)
OneToOne
Species with no ortholog for C16orf93:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C16orf93 Gene

ENSEMBL:
Gene Tree for C16orf93 (if available)
TreeFam:
Gene Tree for C16orf93 (if available)

Paralogs for C16orf93 Gene

No data available for Paralogs for C16orf93 Gene

Variants for C16orf93 Gene

Sequence variations from dbSNP and Humsavar for C16orf93 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs1550477 -- 30,762,501(+) CCCGT(C/T)TGACG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C16orf93 Gene

Variant ID Type Subtype PubMed ID
nsv469724 CNV Loss 16826518
nsv833188 CNV Loss 17160897
nsv905728 CNV Loss 21882294
nsv905729 CNV Loss 21882294
nsv9438 CNV Gain 18304495

Relevant External Links for C16orf93 Gene

HapMap Linkage Disequilibrium report
C16orf93

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C16orf93 Gene

Disorders for C16orf93 Gene

No disorders were found for C16orf93 Gene.

No data available for UniProtKB/Swiss-Prot for C16orf93 Gene

Publications for C16orf93 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 4

Products for C16orf93 Gene

Sources for C16orf93 Gene

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