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Aliases for C16orf92 Gene

Aliases for C16orf92 Gene

  • Chromosome 16 Open Reading Frame 92 2 3 5

External Ids for C16orf92 Gene

Previous GeneCards Identifiers for C16orf92 Gene

  • GC16P029944
  • GC16P027695

Summaries for C16orf92 Gene

GeneCards Summary for C16orf92 Gene

C16orf92 (Chromosome 16 Open Reading Frame 92) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C16orf92 Gene

Genomics for C16orf92 Gene

Regulatory Elements for C16orf92 Gene

Enhancers for C16orf92 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F029783 1.3 FANTOM5 Ensembl ENCODE 56.7 -238.8 -238750 2.8 PKNOX1 MLX ZFP64 ARID4B DMAP1 YY1 CBX5 ZNF143 KLF13 MXD4 C16orf92 CD2BP2 ZNF785 KIF22 ENSG00000261766 ENSG00000260114 GDPD3 TBX6 MYLPF KCTD13
GH16F030051 0.4 ENCODE 12.8 +28.3 28328 1.1 BCOR JUN ZMYM3 ZNF121 ZFHX2 ZBTB48 ZNF366 ZNF600 EGR2 MXD4 TBX6 SMG1P2 ZNF764 C16orf92 BCL7C PPP4C DOC2A ORAI3 HIRIP3 INO80E
GH16F030052 0.2 ENCODE 12.8 +30.9 30871 3.1 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 ZNF747 ZNF764 SMG1P2 NPIPB13 BCL7C ZNF785 PRR14 ZNF629 ZNF689 ENSG00000235560
GH16F029992 1.1 ENCODE 12.6 -28.4 -28411 4.8 HDGF PKNOX1 CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 MIR762HG CA5AP1 SMG1P2 ZNF785 C16orf92 FAM57B TAOK2 CTF1 ZNF747 ENSG00000247735
GH16F029828 0.2 ENCODE 11.8 -193.3 -193305 3.4 ELF3 MLX ARID4B DMAP1 ZSCAN9 DNMT3B RARA YY1 SLC30A9 EGR2 CDIPT-AS1 CDIPT C16orf92 FAM57B DOC2A TMEM219 HIRIP3 INO80E C16orf54 ZNF689
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around C16orf92 on UCSC Golden Path with GeneCards custom track

Promoters for C16orf92 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001800869 -1934 1201 PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF143 ZNF548

Genomic Location for C16orf92 Gene

Chromosome:
16
Start:
30,023,334 bp from pter
End:
30,027,736 bp from pter
Size:
4,403 bases
Orientation:
Plus strand

Genomic View for C16orf92 Gene

Genes around C16orf92 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C16orf92 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C16orf92 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C16orf92 Gene

Proteins for C16orf92 Gene

  • Protein details for C16orf92 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96LL3-CP092_HUMAN
    Recommended name:
    Uncharacterized protein C16orf92
    Protein Accession:
    Q96LL3
    Secondary Accessions:
    • Q494R8

    Protein attributes for C16orf92 Gene

    Size:
    132 amino acids
    Molecular mass:
    14383 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C16orf92 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C16orf92 Gene

Post-translational modifications for C16orf92 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C16orf92 Gene

No data available for DME Specific Peptides for C16orf92 Gene

Domains & Families for C16orf92 Gene

Protein Domains for C16orf92 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C16orf92: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C16orf92 Gene

Function for C16orf92 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C16orf92 Gene

Localization for C16orf92 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C16orf92 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C16orf92 Gene COMPARTMENTS Subcellular localization image for C16orf92 gene
Compartment Confidence
cytosol 1
extracellular 1
mitochondrion 1
nucleus 1
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for C16orf92 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with C16orf92: view

Pathways & Interactions for C16orf92 Gene

SuperPathways for C16orf92 Gene

No Data Available

Interacting Proteins for C16orf92 Gene

Gene Ontology (GO) - Biological Process for C16orf92 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C16orf92 Gene

Transcripts for C16orf92 Gene

mRNA/cDNA for C16orf92 Gene

Unigene Clusters for C16orf92 Gene

Chromosome 16 open reading frame 92:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C16orf92 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4
SP1:
SP2: -

Relevant External Links for C16orf92 Gene

GeneLoc Exon Structure for
C16orf92
ECgene alternative splicing isoforms for
C16orf92

Expression for C16orf92 Gene

mRNA expression in normal human tissues for C16orf92 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C16orf92 Gene

This gene is overexpressed in Testis (x37.6) and Brain - Cerebellum (x4.6).

NURSA nuclear receptor signaling pathways regulating expression of C16orf92 Gene:

C16orf92

SOURCE GeneReport for Unigene cluster for C16orf92 Gene:

Hs.651588
genes like me logo Genes that share expression patterns with C16orf92: view

Primer Products

No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for C16orf92 Gene

Orthologs for C16orf92 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C16orf92 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C16H16orf92 34
  • 99.09 (n)
C16orf92 35
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C6H16orf92 34
  • 78.48 (n)
C16orf92 35
  • 54 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C25H16orf92 34
  • 78.18 (n)
rat
(Rattus norvegicus)
Mammalia RGD1563217 34
  • 75.15 (n)
mouse
(Mus musculus)
Mammalia 4930451I11Rik 34 16 35
  • 73.39 (n)
Species where no ortholog for C16orf92 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C16orf92 Gene

ENSEMBL:
Gene Tree for C16orf92 (if available)
TreeFam:
Gene Tree for C16orf92 (if available)

Paralogs for C16orf92 Gene

No data available for Paralogs for C16orf92 Gene

Variants for C16orf92 Gene

Sequence variations from dbSNP and Humsavar for C16orf92 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs11150582 -- 30,022,806(+) tggca(C/G)acaga intron-variant, upstream-variant-2KB
rs11150583 -- 30,022,868(+) AGGCA(A/G)GAGAA intron-variant, upstream-variant-2KB
rs1129062 -- 30,024,677(-) TTTAT(C/T)TACCC upstream-variant-2KB, utr-variant-3-prime
rs112957207 -- 30,023,044(+) ACCAC(A/C)CCAAA upstream-variant-2KB, utr-variant-5-prime
rs113595171 -- 30,023,751(+) CACGG(A/C/T)GTCAG upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for C16orf92 Gene

Variant ID Type Subtype PubMed ID
nsv1160384 CNV duplication 26073780

Variation tolerance for C16orf92 Gene

Residual Variation Intolerance Score: 68.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.54; 11.68% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C16orf92 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C16orf92

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C16orf92 Gene

Disorders for C16orf92 Gene

Relevant External Links for C16orf92

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C16orf92

No disorders were found for C16orf92 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C16orf92 Gene

Publications for C16orf92 Gene

  1. Biological insights from 108 schizophrenia-associated genetic loci. (PMID: 25056061) (Nature 2014) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for C16orf92 Gene

Sources for C16orf92 Gene

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