Free for academic non-profit institutions. Other users need a Commercial license

Aliases for C16orf92 Gene

Aliases for C16orf92 Gene

  • Chromosome 16 Open Reading Frame 92 2 3

External Ids for C16orf92 Gene

Previous GeneCards Identifiers for C16orf92 Gene

  • GC16P029944
  • GC16P027695

Summaries for C16orf92 Gene

GeneCards Summary for C16orf92 Gene

C16orf92 (Chromosome 16 Open Reading Frame 92) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C16orf92 Gene

Genomics for C16orf92 Gene

Regulatory Elements for C16orf92 Gene

Genomic Location for C16orf92 Gene

Start:
30,023,334 bp from pter
End:
30,027,736 bp from pter
Size:
4,403 bases
Orientation:
Plus strand

Genomic View for C16orf92 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C16orf92 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C16orf92 Gene

Proteins for C16orf92 Gene

  • Protein details for C16orf92 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96LL3-CP092_HUMAN
    Recommended name:
    Uncharacterized protein C16orf92
    Protein Accession:
    Q96LL3
    Secondary Accessions:
    • Q494R8

    Protein attributes for C16orf92 Gene

    Size:
    132 amino acids
    Molecular mass:
    14383 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C16orf92 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C16orf92 Gene

Proteomics data for C16orf92 Gene at MOPED

Post-translational modifications for C16orf92 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C16orf92 Gene

No data available for DME Specific Peptides for C16orf92 Gene

Domains for C16orf92 Gene

Protein Domains for C16orf92 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C16orf92: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C16orf92 Gene

Function for C16orf92 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C16orf92 Gene

Localization for C16orf92 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C16orf92 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C16orf92 Gene COMPARTMENTS Subcellular localization image for C16orf92 gene
Compartment Confidence
cytosol 1
extracellular 1
mitochondrion 1
nucleus 1
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for C16orf92 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with C16orf92: view

Pathways for C16orf92 Gene

SuperPathways for C16orf92 Gene

No Data Available

Interacting Proteins for C16orf92 Gene

Gene Ontology (GO) - Biological Process for C16orf92 Gene

None

No data available for Pathways by source for C16orf92 Gene

Transcripts for C16orf92 Gene

mRNA/cDNA for C16orf92 Gene

Unigene Clusters for C16orf92 Gene

Chromosome 16 open reading frame 92:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C16orf92

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C16orf92 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4
SP1:
SP2: -

Relevant External Links for C16orf92 Gene

GeneLoc Exon Structure for
C16orf92
ECgene alternative splicing isoforms for
C16orf92

Expression for C16orf92 Gene

mRNA expression in normal human tissues for C16orf92 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C16orf92 Gene

This gene is overexpressed in Testis (37.6) and Brain - Cerebellum (4.6).

SOURCE GeneReport for Unigene cluster for C16orf92 Gene Hs.651588

genes like me logo Genes that share expressions with C16orf92: view

In Situ Assay Products

No data available for Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for C16orf92 Gene

Orthologs for C16orf92 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C16orf92 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C25H16orf92 35
  • 78.18 (n)
  • 70 (a)
dog
(Canis familiaris)
Mammalia C6H16orf92 35
  • 78.48 (n)
  • 68.18 (a)
C16orf92 36
  • 54 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 4930451I11Rik 35
  • 73.39 (n)
  • 66.06 (a)
4930451I11Rik 16
4930451I11Rik 36
  • 55 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C16H16orf92 35
  • 99.09 (n)
  • 99.09 (a)
C16orf92 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1563217 35
  • 75.15 (n)
  • 66.36 (a)
Species with no ortholog for C16orf92:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C16orf92 Gene

ENSEMBL:
Gene Tree for C16orf92 (if available)
TreeFam:
Gene Tree for C16orf92 (if available)

Paralogs for C16orf92 Gene

No data available for Paralogs for C16orf92 Gene

Variants for C16orf92 Gene

Sequence variations from dbSNP and Humsavar for C16orf92 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs35615329 -- 30,023,835(-) CAGCC(-/A)AGCAG reference, frameshift-variant
rs79063905 -- 30,023,665(+) CTTCC(A/G)CCTCG intron-variant, synonymous-codon, reference
rs113595171 -- 30,023,751(+) CACGG(A/C)GTCAG missense, reference
rs115303964 -- 30,023,689(+) GGGGT(A/C)AGCTT intron-variant, synonymous-codon, reference
rs148717168 -- 30,023,560(+) CAACC(A/G)CGAGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C16orf92 Gene

Variant ID Type Subtype PubMed ID
nsv905717 CNV Loss 21882294
dgv2668n71 CNV Loss 21882294

Relevant External Links for C16orf92 Gene

HapMap Linkage Disequilibrium report
C16orf92

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C16orf92 Gene

Disorders for C16orf92 Gene

No disorders were found for C16orf92 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for C16orf92 Gene

Publications for C16orf92 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for C16orf92 Gene

Sources for C16orf92 Gene

Back to Top

Content