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Aliases for C16orf90 Gene

Aliases for C16orf90 Gene

  • Chromosome 16 Open Reading Frame 90 2 3 5

External Ids for C16orf90 Gene

Previous GeneCards Identifiers for C16orf90 Gene

  • GC16M003484
  • GC16M003543

Summaries for C16orf90 Gene

GeneCards Summary for C16orf90 Gene

C16orf90 (Chromosome 16 Open Reading Frame 90) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C16orf90 Gene

Genomics for C16orf90 Gene

Regulatory Elements for C16orf90 Gene

Enhancers for C16orf90 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G003295 0.5 FANTOM5 45.4 +200.5 200524 0.1 POLR2A RBFOX2 C16orf90 ZNF263 ZNF200 MEFV OR2C1 ZNF174 ZSCAN32 SLX4 ENSG00000279031 GC16P003413
GH16G003214 1.4 Ensembl ENCODE 10.5 +280.0 279996 2.7 HDGF PKNOX1 CREB3L1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 CBX5 MEFV ZNF200 ZNF75A TIGD7 NAA60 ZNF597 ZNF174 ZSCAN32 OR2C1 C16orf90
GH16G003519 0.7 ENCODE 11.3 -24.8 -24821 1.9 BCOR FOXA2 RFX1 SP5 ZMYM3 TEAD3 RARA TBX3 ADNP NR2F6 NLRC3 C16orf90 RPL18P12 TRAP1 CREBBP ZNF200 DNASE1 ZNF205-AS1 ENSG00000278942 CLUAP1
GH16G003296 0.5 FANTOM5 9.5 +200.2 200184 0.2 ZNF366 POLR2A RBFOX2 OR2C1 ZNF263 ZNF200 MEFV ZNF174 ZSCAN32 C16orf90 OR1F1 SLX4 CLUAP1
GH16G003190 1.2 FANTOM5 ENCODE 1.8 +304.4 304412 0.8 ATF1 ARID4B SIN3A ZNF2 GTF3C2 FOS ZHX2 ZNF491 ZNF623 ZNF579 ZNF205 ZNF213-AS1 THOC6 LOC105371055 CREBBP RNPS1 ERVK13-1 ZNF263 PDPK2P MTCO1P28
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C16orf90 on UCSC Golden Path with GeneCards custom track

Genomic Location for C16orf90 Gene

3,493,484 bp from pter
3,495,721 bp from pter
2,238 bases
Minus strand

Genomic View for C16orf90 Gene

Genes around C16orf90 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C16orf90 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C16orf90 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C16orf90 Gene

Proteins for C16orf90 Gene

  • Protein details for C16orf90 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein C16orf90
    Protein Accession:

    Protein attributes for C16orf90 Gene

    172 amino acids
    Molecular mass:
    18426 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C16orf90 Gene


neXtProt entry for C16orf90 Gene

Post-translational modifications for C16orf90 Gene

No Post-translational modifications

Other Protein References for C16orf90 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C16orf90 Gene

Domains & Families for C16orf90 Gene

Protein Domains for C16orf90 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C16orf90: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C16orf90 Gene

Function for C16orf90 Gene

Phenotypes for C16orf90 Gene

GenomeRNAi human phenotypes for C16orf90:
genes like me logo Genes that share phenotypes with C16orf90: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C16orf90 Gene

Localization for C16orf90 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C16orf90 gene
Compartment Confidence
extracellular 2
nucleus 2
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C16orf90 Gene

Pathways & Interactions for C16orf90 Gene

SuperPathways for C16orf90 Gene

No Data Available

Interacting Proteins for C16orf90 Gene

Gene Ontology (GO) - Biological Process for C16orf90 Gene


No data available for Pathways by source and SIGNOR curated interactions for C16orf90 Gene

Drugs & Compounds for C16orf90 Gene

No Compound Related Data Available

Transcripts for C16orf90 Gene

mRNA/cDNA for C16orf90 Gene

(2) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C16orf90 Gene

Chromosome 16 open reading frame 90:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for C16orf90 Gene

No ASD Table

Relevant External Links for C16orf90 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for C16orf90 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C16orf90 Gene

mRNA differential expression in normal tissues according to GTEx for C16orf90 Gene

This gene is overexpressed in Testis (x50.9).

NURSA nuclear receptor signaling pathways regulating expression of C16orf90 Gene:


SOURCE GeneReport for Unigene cluster for C16orf90 Gene:

genes like me logo Genes that share expression patterns with C16orf90: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C16orf90 Gene

Orthologs for C16orf90 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C16orf90 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia C16H16orf90 34
  • 99.63 (n)
C16orf90 35
  • 99 (a)
(Mus musculus)
Mammalia 1700037C18Rik 34 16 35
  • 85.54 (n)
(Rattus norvegicus)
Mammalia RGD1561796 34
  • 84.9 (n)
(Canis familiaris)
Mammalia C6H16orf90 34
  • 84.25 (n)
C16orf90 35
  • 66 (a)
(Bos Taurus)
Mammalia C25H16orf90 34
  • 84.21 (n)
C16orf90 35
  • 74 (a)
(Ornithorhynchus anatinus)
Mammalia C16orf90 35
  • 39 (a)
Species where no ortholog for C16orf90 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C16orf90 Gene

Gene Tree for C16orf90 (if available)
Gene Tree for C16orf90 (if available)

Paralogs for C16orf90 Gene

No data available for Paralogs for C16orf90 Gene

Variants for C16orf90 Gene

Sequence variations from dbSNP and Humsavar for C16orf90 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000420994 -- 3,494,006(+) AGAGA(A/G)AGGAG intron-variant, upstream-variant-2KB
rs1000452259 -- 3,493,770(+) CCGAG(C/T)CCCTC upstream-variant-2KB, utr-variant-3-prime
rs1001140390 -- 3,494,707(+) TGGCG(C/G)GTGGC upstream-variant-2KB, reference, missense
rs1001596488 -- 3,494,353(+) GACCC(C/T)GCTTA intron-variant, upstream-variant-2KB
rs1001969533 -- 3,495,264(+) CAGTG(A/G)CCATT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C16orf90 Gene

Variant ID Type Subtype PubMed ID
nsv952908 CNV deletion 24416366

Variation tolerance for C16orf90 Gene

Residual Variation Intolerance Score: 91% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C16orf90 Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C16orf90 Gene

Disorders for C16orf90 Gene

Relevant External Links for C16orf90

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for C16orf90 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C16orf90 Gene

Publications for C16orf90 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  2. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 4 64

Products for C16orf90 Gene

Sources for C16orf90 Gene

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