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Aliases for C16orf90 Gene

Aliases for C16orf90 Gene

  • Chromosome 16 Open Reading Frame 90 2 3 5

External Ids for C16orf90 Gene

Previous GeneCards Identifiers for C16orf90 Gene

  • GC16M003484
  • GC16M003543

Summaries for C16orf90 Gene

GeneCards Summary for C16orf90 Gene

C16orf90 (Chromosome 16 Open Reading Frame 90) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C16orf90 Gene

Genomics for C16orf90 Gene

Regulatory Elements for C16orf90 Gene

Enhancers for C16orf90 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around C16orf90 on UCSC Golden Path with GeneCards custom track

Genomic Location for C16orf90 Gene

Chromosome:
16
Start:
3,493,484 bp from pter
End:
3,495,721 bp from pter
Size:
2,238 bases
Orientation:
Minus strand

Genomic View for C16orf90 Gene

Genes around C16orf90 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C16orf90 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C16orf90 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C16orf90 Gene

Proteins for C16orf90 Gene

  • Protein details for C16orf90 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MZG2-CP090_HUMAN
    Recommended name:
    Uncharacterized protein C16orf90
    Protein Accession:
    A8MZG2

    Protein attributes for C16orf90 Gene

    Size:
    172 amino acids
    Molecular mass:
    18426 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C16orf90 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C16orf90 Gene

Proteomics data for C16orf90 Gene at MOPED

Post-translational modifications for C16orf90 Gene

No Post-translational modifications

Other Protein References for C16orf90 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C16orf90 Gene

Domains & Families for C16orf90 Gene

Protein Domains for C16orf90 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C16orf90: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C16orf90 Gene

Function for C16orf90 Gene

Phenotypes for C16orf90 Gene

GenomeRNAi human phenotypes for C16orf90:
genes like me logo Genes that share phenotypes with C16orf90: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C16orf90 Gene

Localization for C16orf90 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C16orf90 Gene COMPARTMENTS Subcellular localization image for C16orf90 gene
Compartment Confidence
cytosol 2
extracellular 2
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C16orf90 Gene

Pathways & Interactions for C16orf90 Gene

SuperPathways for C16orf90 Gene

No Data Available

Interacting Proteins for C16orf90 Gene

Gene Ontology (GO) - Biological Process for C16orf90 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C16orf90 Gene

Drugs & Compounds for C16orf90 Gene

No Compound Related Data Available

Transcripts for C16orf90 Gene

mRNA/cDNA for C16orf90 Gene

(2) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C16orf90 Gene

Chromosome 16 open reading frame 90:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C16orf90 Gene

No ASD Table

Relevant External Links for C16orf90 Gene

GeneLoc Exon Structure for
C16orf90
ECgene alternative splicing isoforms for
C16orf90

Expression for C16orf90 Gene

mRNA expression in normal human tissues for C16orf90 Gene

mRNA differential expression in normal tissues according to GTEx for C16orf90 Gene

This gene is overexpressed in Testis (x50.9).

SOURCE GeneReport for Unigene cluster for C16orf90 Gene Hs.632224

genes like me logo Genes that share expression patterns with C16orf90: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for C16orf90 Gene

Orthologs for C16orf90 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C16orf90 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C25H16orf90 35
  • 84.21 (n)
  • 76.02 (a)
C16orf90 36
  • 74 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C6H16orf90 35
  • 84.25 (n)
  • 78.02 (a)
C16orf90 36
  • 66 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 1700037C18Rik 35
  • 85.54 (n)
  • 76.51 (a)
1700037C18Rik 16
1700037C18Rik 36
  • 74 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C16H16orf90 35
  • 99.63 (n)
  • 98.9 (a)
C16orf90 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1561796 35
  • 84.9 (n)
  • 77.35 (a)
platypus
(Ornithorhynchus anatinus)
Mammalia C16orf90 36
  • 39 (a)
OneToOne
Species with no ortholog for C16orf90:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C16orf90 Gene

ENSEMBL:
Gene Tree for C16orf90 (if available)
TreeFam:
Gene Tree for C16orf90 (if available)

Paralogs for C16orf90 Gene

No data available for Paralogs for C16orf90 Gene

Variants for C16orf90 Gene

Sequence variations from dbSNP and Humsavar for C16orf90 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs4268749 -- 3,497,594(+) ACAGA(G/T)AAAAT upstream-variant-2KB
rs9923182 -- 3,493,820(+) ACCCA(A/G)TCCTG utr-variant-3-prime
rs9926502 -- 3,495,441(+) GTGGG(A/G)AGGAG upstream-variant-2KB, reference, synonymous-codon
rs61731450 -- 3,494,512(+) GCCTT(C/G)ACAGA intron-variant
rs61731451 -- 3,494,586(+) TGTTA(C/T)GTGGG reference, missense

Structural Variations from Database of Genomic Variants (DGV) for C16orf90 Gene

Variant ID Type Subtype PubMed ID
nsv905213 CNV Loss 21882294
nsv905214 CNV Loss 21882294
nsv905215 CNV Loss 21882294

Variation tolerance for C16orf90 Gene

Residual Variation Intolerance Score: 91% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C16orf90 Gene

HapMap Linkage Disequilibrium report
C16orf90

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C16orf90 Gene

Disorders for C16orf90 Gene

Relevant External Links for C16orf90

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C16orf90

No disorders were found for C16orf90 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C16orf90 Gene

Publications for C16orf90 Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 4 67

Products for C16orf90 Gene

Sources for C16orf90 Gene

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