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Aliases for C16orf87 Gene

Aliases for C16orf87 Gene

  • Chromosome 16 Open Reading Frame 87 2 3

External Ids for C16orf87 Gene

Previous GeneCards Identifiers for C16orf87 Gene

  • GC16M045394
  • GC16M032725

Summaries for C16orf87 Gene

GeneCards Summary for C16orf87 Gene

C16orf87 (Chromosome 16 Open Reading Frame 87) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C16orf87 Gene

Genomics for C16orf87 Gene

Regulatory Elements for C16orf87 Gene

Genomic Location for C16orf87 Gene

Start:
46,796,607 bp from pter
End:
46,831,411 bp from pter
Size:
34,805 bases
Orientation:
Minus strand

Genomic View for C16orf87 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C16orf87 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C16orf87 Gene

Proteins for C16orf87 Gene

  • Protein details for C16orf87 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6PH81-CP087_HUMAN
    Recommended name:
    UPF0547 protein C16orf87
    Protein Accession:
    Q6PH81
    Secondary Accessions:
    • Q63HN9

    Protein attributes for C16orf87 Gene

    Size:
    154 amino acids
    Molecular mass:
    17799 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C16orf87 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C16orf87 Gene

Proteomics data for C16orf87 Gene at MOPED

Post-translational modifications for C16orf87 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C16orf87 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C16orf87 Gene

Domains for C16orf87 Gene

Protein Domains for C16orf87 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C16orf87 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6PH81

UniProtKB/Swiss-Prot:

CP087_HUMAN :
  • Q6PH81
Family:
  • Belongs to the UPF0547 family.
genes like me logo Genes that share domains with C16orf87: view

No data available for Gene Families for C16orf87 Gene

Function for C16orf87 Gene

Gene Ontology (GO) - Molecular Function for C16orf87 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 23752268
genes like me logo Genes that share ontologies with C16orf87: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C16orf87 Gene

Localization for C16orf87 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C16orf87 Gene COMPARTMENTS Subcellular localization image for C16orf87 gene
Compartment Confidence
nucleus 3
cytosol 1
extracellular 1
mitochondrion 1
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C16orf87 Gene

Pathways for C16orf87 Gene

SuperPathways for C16orf87 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C16orf87 Gene

None

No data available for Pathways by source for C16orf87 Gene

Transcripts for C16orf87 Gene

mRNA/cDNA for C16orf87 Gene

Unigene Clusters for C16orf87 Gene

Chromosome 16 open reading frame 87:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C16orf87 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b
SP1: - -
SP2:
SP3: - - -
SP4: -

Relevant External Links for C16orf87 Gene

GeneLoc Exon Structure for
C16orf87
ECgene alternative splicing isoforms for
C16orf87

Expression for C16orf87 Gene

mRNA expression in normal human tissues for C16orf87 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C16orf87 Gene

SOURCE GeneReport for Unigene cluster for C16orf87 Gene Hs.406551

genes like me logo Genes that share expressions with C16orf87: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C16orf87 Gene

Orthologs for C16orf87 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C16orf87 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C16H16orf87 35
  • 99.5 (n)
  • 98.51 (a)
C16ORF87 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C18H16orf87 35
  • 97.84 (n)
  • 98.05 (a)
C18H16orf87 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C16orf87 36
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 4921524J17Rik 35
  • 95.02 (n)
  • 98.7 (a)
4921524J17Rik 16
4921524J17Rik 36
  • 99 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C16orf87 36
  • 95 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C16orf87 36
  • 87 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1308706 35
  • 95.45 (n)
  • 98.7 (a)
chicken
(Gallus gallus)
Aves C11H16ORF87 35
  • 86.58 (n)
  • 91.56 (a)
C11H16ORF87 36
  • 92 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c16orf87 35
  • 74.54 (n)
  • 79.17 (a)
zebrafish
(Danio rerio)
Actinopterygii C7H16orf87 36
  • 77 (a)
OneToOne
Dr.14841 35
zgc:92818 35
  • 71.27 (n)
  • 76.97 (a)
Species with no ortholog for C16orf87:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C16orf87 Gene

ENSEMBL:
Gene Tree for C16orf87 (if available)
TreeFam:
Gene Tree for C16orf87 (if available)

Paralogs for C16orf87 Gene

No data available for Paralogs for C16orf87 Gene

Variants for C16orf87 Gene

Sequence variations from dbSNP and Humsavar for C16orf87 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs396907 -- 46,817,269(+) CACAA(C/T)AGAAG intron-variant
rs415018 -- 46,811,276(-) tccac(A/C)cgcct intron-variant
rs438097 -- 46,806,495(-) GATCA(C/T)GAGGT intron-variant
rs438275 -- 46,807,203(-) TTGGC(C/T)TTCCA intron-variant
rs633699 -- 46,805,476(-) acaag(A/G)tgata intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C16orf87 Gene

Variant ID Type Subtype PubMed ID
nsv526656 CNV Gain 19592680

Relevant External Links for C16orf87 Gene

HapMap Linkage Disequilibrium report
C16orf87

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C16orf87 Gene

Disorders for C16orf87 Gene

No disorders were found for C16orf87 Gene.

No data available for UniProtKB/Swiss-Prot for C16orf87 Gene

Publications for C16orf87 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  3. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K. … Gorospe M. (EMBO J. 2009) 3
  4. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3
  5. The functional interactome landscape of the human histone deacetylase family. (PMID: 23752268) Joshi P. … Cristea I.M. (Mol. Syst. Biol. 2013) 3

Products for C16orf87 Gene

Sources for C16orf87 Gene

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