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Aliases for C16orf87 Gene

Aliases for C16orf87 Gene

  • Chromosome 16 Open Reading Frame 87 2 3 5

External Ids for C16orf87 Gene

Previous GeneCards Identifiers for C16orf87 Gene

  • GC16M045394
  • GC16M032725

Summaries for C16orf87 Gene

GeneCards Summary for C16orf87 Gene

C16orf87 (Chromosome 16 Open Reading Frame 87) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C16orf87 Gene

Genomics for C16orf87 Gene

Regulatory Elements for C16orf87 Gene

Enhancers for C16orf87 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around C16orf87 on UCSC Golden Path with GeneCards custom track

Promoters for C16orf87 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around C16orf87 on UCSC Golden Path with GeneCards custom track

Genomic Location for C16orf87 Gene

Chromosome:
16
Start:
46,796,607 bp from pter
End:
46,831,411 bp from pter
Size:
34,805 bases
Orientation:
Minus strand

Genomic View for C16orf87 Gene

Genes around C16orf87 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C16orf87 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C16orf87 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C16orf87 Gene

Proteins for C16orf87 Gene

  • Protein details for C16orf87 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6PH81-CP087_HUMAN
    Recommended name:
    UPF0547 protein C16orf87
    Protein Accession:
    Q6PH81
    Secondary Accessions:
    • Q63HN9

    Protein attributes for C16orf87 Gene

    Size:
    154 amino acids
    Molecular mass:
    17799 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C16orf87 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C16orf87 Gene

Proteomics data for C16orf87 Gene at MOPED

Post-translational modifications for C16orf87 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C16orf87 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C16orf87 Gene

Domains & Families for C16orf87 Gene

Protein Domains for C16orf87 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C16orf87 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6PH81

UniProtKB/Swiss-Prot:

CP087_HUMAN :
  • Belongs to the UPF0547 family.
Family:
  • Belongs to the UPF0547 family.
genes like me logo Genes that share domains with C16orf87: view

No data available for Gene Families for C16orf87 Gene

Function for C16orf87 Gene

Phenotypes for C16orf87 Gene

genes like me logo Genes that share phenotypes with C16orf87: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C16orf87 Gene

Localization for C16orf87 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C16orf87 Gene COMPARTMENTS Subcellular localization image for C16orf87 gene
Compartment Confidence
nucleus 4
cytosol 1
extracellular 1
mitochondrion 1
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C16orf87 Gene

Pathways & Interactions for C16orf87 Gene

SuperPathways for C16orf87 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C16orf87 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C16orf87 Gene

Drugs & Compounds for C16orf87 Gene

No Compound Related Data Available

Transcripts for C16orf87 Gene

mRNA/cDNA for C16orf87 Gene

Unigene Clusters for C16orf87 Gene

Chromosome 16 open reading frame 87:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C16orf87 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b
SP1: - -
SP2:
SP3: - - -
SP4: -

Relevant External Links for C16orf87 Gene

GeneLoc Exon Structure for
C16orf87
ECgene alternative splicing isoforms for
C16orf87

Expression for C16orf87 Gene

mRNA expression in normal human tissues for C16orf87 Gene

Protein differential expression in normal tissues from HIPED for C16orf87 Gene

This gene is overexpressed in Blymphocyte (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MOPED, and MaxQB for C16orf87 Gene



SOURCE GeneReport for Unigene cluster for C16orf87 Gene Hs.406551

genes like me logo Genes that share expression patterns with C16orf87: view

Protein tissue co-expression partners for C16orf87 Gene

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C16orf87 Gene

Orthologs for C16orf87 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C16orf87 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C18H16orf87 35
  • 97.84 (n)
  • 98.05 (a)
C18H16orf87 36
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 4921524J17Rik 35
  • 95.02 (n)
  • 98.7 (a)
4921524J17Rik 16
4921524J17Rik 36
  • 99 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C16H16orf87 35
  • 99.5 (n)
  • 98.51 (a)
C16ORF87 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1308706 35
  • 95.45 (n)
  • 98.7 (a)
dog
(Canis familiaris)
Mammalia C16orf87 36
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C16orf87 36
  • 95 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C16orf87 36
  • 87 (a)
OneToOne
chicken
(Gallus gallus)
Aves C11H16ORF87 35
  • 86.58 (n)
  • 91.56 (a)
C11H16ORF87 36
  • 92 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c16orf87 35
  • 74.54 (n)
  • 79.17 (a)
zebrafish
(Danio rerio)
Actinopterygii Dr.14841 35
zgc:92818 35
  • 71.27 (n)
  • 76.97 (a)
C7H16orf87 36
  • 77 (a)
OneToOne
Species with no ortholog for C16orf87:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C16orf87 Gene

ENSEMBL:
Gene Tree for C16orf87 (if available)
TreeFam:
Gene Tree for C16orf87 (if available)

Paralogs for C16orf87 Gene

No data available for Paralogs for C16orf87 Gene

Variants for C16orf87 Gene

Sequence variations from dbSNP and Humsavar for C16orf87 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs4141492 -- 46,818,281(-) AATCC(A/C)aagtg intron-variant
rs12934763 -- 46,807,466(+) ttggc(A/C)aacta intron-variant
rs4605188 -- 46,819,731(+) GCACT(C/T)TGGGA intron-variant
rs396907 -- 46,817,269(+) CACAA(C/T)AGAAG intron-variant
rs9922581 -- 46,822,065(+) ATTTT(A/G)TTTTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C16orf87 Gene

Variant ID Type Subtype PubMed ID
nsv526656 CNV Gain 19592680

Variation tolerance for C16orf87 Gene

Residual Variation Intolerance Score: 39.8% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C16orf87 Gene

HapMap Linkage Disequilibrium report
C16orf87

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C16orf87 Gene

Disorders for C16orf87 Gene

Relevant External Links for C16orf87

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C16orf87

No disorders were found for C16orf87 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C16orf87 Gene

Publications for C16orf87 Gene

  1. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 67
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  3. The functional interactome landscape of the human histone deacetylase family. (PMID: 23752268) Joshi P. … Cristea I.M. (Mol. Syst. Biol. 2013) 3
  4. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3
  5. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K. … Gorospe M. (EMBO J. 2009) 3

Products for C16orf87 Gene

Sources for C16orf87 Gene

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