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Aliases for C16orf86 Gene

Aliases for C16orf86 Gene

  • Chromosome 16 Open Reading Frame 86 2 3 5

External Ids for C16orf86 Gene

Previous GeneCards Identifiers for C16orf86 Gene

  • GC16P066259
  • GC16P053573

Summaries for C16orf86 Gene

GeneCards Summary for C16orf86 Gene

C16orf86 (Chromosome 16 Open Reading Frame 86) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C16orf86 Gene

Genomics for C16orf86 Gene

Regulatory Elements for C16orf86 Gene

Enhancers for C16orf86 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G067545 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.9 -118.7 -118718 5.3 HDGF ARNT WRNIP1 ARID4B ZNF2 YY1 ZNF121 ZNF143 SP5 REST HSD11B2 CARMIL2 ATP6V0D1 RIPOR1 PARD6A ACD ENSG00000237718 C16orf86 ENKD1 DPEP2
GH16G067479 1.7 FANTOM5 ENCODE dbSUPER 10.8 -184.8 -184754 5.0 HDGF PKNOX1 MLX CREB3L1 ARNT ZFP64 SIN3A ARID4B FEZF1 DMAP1 ATP6V0D1 ACD ZDHHC1 ENKD1 SLC7A6OS RIPOR1 CARMIL2 C16orf86 ENSG00000259797 HSD11B2
GH16G067555 1.5 Ensembl ENCODE dbSUPER 10.9 -110.5 -110498 2.0 ZNF493 ZFP64 ZNF121 KLF7 FOS ZNF202 REST ZNF623 ZNF518A ZNF292 ZDHHC1 ENSG00000260465 CENPT ACD ENKD1 E2F4 KIAA0895L ENSG00000263276 FBXL8 ENSG00000270165
GH16G067925 1.4 Ensembl ENCODE dbSUPER 10.5 +259.7 259729 1.4 PKNOX1 FEZF1 ZNF2 ZNF48 EGR1 SCRT2 FOS PAF1 ZEB2 NR2F2 PSKH1 NRN1L SLC12A4 CENPT THAP11 EDC4 DPEP3 C16orf86 ENKD1 DUS2
GH16G067942 1.2 ENCODE dbSUPER 11 +277.0 277013 3.3 HDGF FOXA2 PKNOX1 MLX AGO1 ARID4B ZNF48 YY1 ZNF143 KLF13 DUS2 DPEP3 RNU6-359P PSKH1 C16orf86 ENKD1 NRN1L CENPT THAP11 NFATC3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C16orf86 on UCSC Golden Path with GeneCards custom track

Promoters for C16orf86 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000087166 -106 1001 ATF1 MLX CREB3L1 ARID4B SIN3A DMAP1 ZNF48 ETS1 SLC30A9 ZNF207

Genomic Location for C16orf86 Gene

Chromosome:
16
Start:
67,666,806 bp from pter
End:
67,668,758 bp from pter
Size:
1,953 bases
Orientation:
Plus strand

Genomic View for C16orf86 Gene

Genes around C16orf86 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C16orf86 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C16orf86 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C16orf86 Gene

Proteins for C16orf86 Gene

  • Protein details for C16orf86 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZW13-CP086_HUMAN
    Recommended name:
    Uncharacterized protein C16orf86
    Protein Accession:
    Q6ZW13
    Secondary Accessions:
    • B5MCW6

    Protein attributes for C16orf86 Gene

    Size:
    317 amino acids
    Molecular mass:
    33511 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC85694.1; Type=Miscellaneous discrepancy; Note=Intron retention.; Evidence={ECO:0000305};

neXtProt entry for C16orf86 Gene

Post-translational modifications for C16orf86 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C16orf86 Gene

No data available for DME Specific Peptides for C16orf86 Gene

Domains & Families for C16orf86 Gene

Protein Domains for C16orf86 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C16orf86: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C16orf86 Gene

Function for C16orf86 Gene

Phenotypes for C16orf86 Gene

genes like me logo Genes that share phenotypes with C16orf86: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C16orf86 Gene

Localization for C16orf86 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C16orf86 gene
Compartment Confidence
nucleus 2
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C16orf86 Gene

Pathways & Interactions for C16orf86 Gene

SuperPathways for C16orf86 Gene

No Data Available

Interacting Proteins for C16orf86 Gene

Gene Ontology (GO) - Biological Process for C16orf86 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C16orf86 Gene

Drugs & Compounds for C16orf86 Gene

No Compound Related Data Available

Transcripts for C16orf86 Gene

Unigene Clusters for C16orf86 Gene

Chromosome 16 open reading frame 86:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for C16orf86 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4
SP1:
SP2: -
SP3: -
SP4: - -

Relevant External Links for C16orf86 Gene

GeneLoc Exon Structure for
C16orf86
ECgene alternative splicing isoforms for
C16orf86

Expression for C16orf86 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C16orf86 Gene

mRNA differential expression in normal tissues according to GTEx for C16orf86 Gene

This gene is overexpressed in Testis (x6.7), Brain - Cerebellum (x5.3), and Brain - Cerebellar Hemisphere (x4.2).

Protein differential expression in normal tissues from HIPED for C16orf86 Gene

This gene is overexpressed in Testis (58.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C16orf86 Gene



Protein tissue co-expression partners for C16orf86 Gene

NURSA nuclear receptor signaling pathways regulating expression of C16orf86 Gene:

C16orf86

SOURCE GeneReport for Unigene cluster for C16orf86 Gene:

Hs.632208
genes like me logo Genes that share expression patterns with C16orf86: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C16orf86 Gene

Orthologs for C16orf86 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C16orf86 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C16H16orf86 34
  • 98.84 (n)
C16orf86 35
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C5H16orf86 34
  • 81.81 (n)
C16orf86 35
  • 71 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C18H16orf86 34
  • 79.01 (n)
C16orf86 35
  • 71 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1561415 34
  • 76.08 (n)
mouse
(Mus musculus)
Mammalia 4933405L10Rik 34 16 35
  • 74.12 (n)
Species where no ortholog for C16orf86 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C16orf86 Gene

ENSEMBL:
Gene Tree for C16orf86 (if available)
TreeFam:
Gene Tree for C16orf86 (if available)

Paralogs for C16orf86 Gene

No data available for Paralogs for C16orf86 Gene

Variants for C16orf86 Gene

Sequence variations from dbSNP and Humsavar for C16orf86 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1002798011 -- 67,665,023(+) GACTC(C/T)ACCTT upstream-variant-2KB, reference, synonymous-codon
rs1002995500 -- 67,669,473(+) CCTTC(C/G)TCCAA utr-variant-3-prime
rs1003259727 -- 67,667,385(+) GCTTC(C/G)GAGTC upstream-variant-2KB, reference, synonymous-codon
rs1003332786 -- 67,668,982(+) GTGAG(A/G)AGGAG intron-variant, utr-variant-3-prime
rs1003410256 -- 67,670,547(+) GGTCT(A/C/G)TGTTG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for C16orf86 Gene

Variant ID Type Subtype PubMed ID
nsv522852 CNV gain 19592680
nsv524363 CNV loss 19592680
nsv952046 CNV deletion 24416366

Variation tolerance for C16orf86 Gene

Residual Variation Intolerance Score: 59.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.12; 22.69% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C16orf86 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C16orf86

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C16orf86 Gene

Disorders for C16orf86 Gene

Relevant External Links for C16orf86

Genetic Association Database (GAD)
C16orf86
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C16orf86

No disorders were found for C16orf86 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C16orf86 Gene

Publications for C16orf86 Gene

  1. Biological insights from 108 schizophrenia-associated genetic loci. (PMID: 25056061) (Nature 2014) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 64
  3. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for C16orf86 Gene

Sources for C16orf86 Gene

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