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Aliases for C16orf86 Gene

Aliases for C16orf86 Gene

  • Chromosome 16 Open Reading Frame 86 2 3

External Ids for C16orf86 Gene

Previous GeneCards Identifiers for C16orf86 Gene

  • GC16P066259
  • GC16P053573

Summaries for C16orf86 Gene

GeneCards Summary for C16orf86 Gene

C16orf86 (Chromosome 16 Open Reading Frame 86) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C16orf86 Gene

Genomics for C16orf86 Gene

Regulatory Elements for C16orf86 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for C16orf86 Gene

Start:
67,666,793 bp from pter
End:
67,668,758 bp from pter
Size:
1,966 bases
Orientation:
Plus strand

Genomic View for C16orf86 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C16orf86 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C16orf86 Gene

Proteins for C16orf86 Gene

  • Protein details for C16orf86 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZW13-CP086_HUMAN
    Recommended name:
    Uncharacterized protein C16orf86
    Protein Accession:
    Q6ZW13
    Secondary Accessions:
    • B5MCW6

    Protein attributes for C16orf86 Gene

    Size:
    317 amino acids
    Molecular mass:
    33511 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC85694.1; Type=Miscellaneous discrepancy; Note=Intron retention.; Evidence={ECO:0000305};

neXtProt entry for C16orf86 Gene

Proteomics data for C16orf86 Gene at MOPED

Post-translational modifications for C16orf86 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C16orf86 Gene

No data available for DME Specific Peptides for C16orf86 Gene

Domains for C16orf86 Gene

Protein Domains for C16orf86 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C16orf86: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C16orf86 Gene

Function for C16orf86 Gene

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C16orf86

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C16orf86 Gene

Localization for C16orf86 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C16orf86 Gene COMPARTMENTS Subcellular localization image for C16orf86 gene
Compartment Confidence
cytosol 2
nucleus 2
golgi apparatus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C16orf86 Gene

Pathways for C16orf86 Gene

SuperPathways for C16orf86 Gene

No Data Available

Interacting Proteins for C16orf86 Gene

Gene Ontology (GO) - Biological Process for C16orf86 Gene

None

No data available for Pathways by source for C16orf86 Gene

Transcripts for C16orf86 Gene

Unigene Clusters for C16orf86 Gene

Chromosome 16 open reading frame 86:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C16orf86

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C16orf86 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4
SP1:
SP2: -
SP3: -
SP4: - -

Relevant External Links for C16orf86 Gene

GeneLoc Exon Structure for
C16orf86
ECgene alternative splicing isoforms for
C16orf86

Expression for C16orf86 Gene

mRNA expression in normal human tissues for C16orf86 Gene

mRNA differential expression in normal tissues according to GTEx for C16orf86 Gene

This gene is overexpressed in Testis (6.7), Brain - Cerebellum (5.3), and Brain - Cerebellar Hemisphere (4.2).

Protein differential expression in normal tissues for C16orf86 Gene

This gene is overexpressed in Testis (58.9).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C16orf86 Gene

SOURCE GeneReport for Unigene cluster for C16orf86 Gene Hs.632208

genes like me logo Genes that share expressions with C16orf86: view

Expression partners for C16orf86 Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for C16orf86 Gene

Orthologs for C16orf86 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C16orf86 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C18H16orf86 35
  • 79.01 (n)
  • 72.15 (a)
C16orf86 36
  • 71 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C5H16orf86 35
  • 81.81 (n)
  • 72.24 (a)
C16orf86 36
  • 71 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 4933405L10Rik 35
  • 74.12 (n)
  • 67.46 (a)
4933405L10Rik 16
4933405L10Rik 36
  • 63 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C16H16orf86 35
  • 98.84 (n)
  • 98.42 (a)
C16orf86 36
  • 98 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1561415 35
  • 76.08 (n)
  • 71.09 (a)
Species with no ortholog for C16orf86:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C16orf86 Gene

ENSEMBL:
Gene Tree for C16orf86 (if available)
TreeFam:
Gene Tree for C16orf86 (if available)

Paralogs for C16orf86 Gene

No data available for Paralogs for C16orf86 Gene

Variants for C16orf86 Gene

Sequence variations from dbSNP and Humsavar for C16orf86 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs79418442 -- 67,669,137(+) GAGTT(A/C)TTTTG downstream-variant-500B
rs139769537 -- 67,668,981(+) AGTGA(A/G)AAGGA downstream-variant-500B
rs185710734 -- 67,669,088(+) TCTCA(C/T)CTTGA downstream-variant-500B
rs535504188 -- 67,668,829(+) TTGAG(A/G)CCTGA downstream-variant-500B
rs537714976 -- 67,669,253(+) TCAGT(C/G)ATGTT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for C16orf86 Gene

Variant ID Type Subtype PubMed ID
nsv524363 CNV Loss 19592680
nsv522852 CNV Gain 19592680
dgv2890n71 CNV Loss 21882294
dgv2891n71 CNV Loss 21882294

Relevant External Links for C16orf86 Gene

HapMap Linkage Disequilibrium report
C16orf86

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C16orf86 Gene

Disorders for C16orf86 Gene

Relevant External Links for C16orf86

Genetic Association Database (GAD)
C16orf86

No disorders were found for C16orf86 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for C16orf86 Gene

Publications for C16orf86 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  3. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 4

Products for C16orf86 Gene

Sources for C16orf86 Gene

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