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Aliases for C16orf78 Gene

Aliases for C16orf78 Gene

  • Chromosome 16 Open Reading Frame 78 2 3

External Ids for C16orf78 Gene

Previous GeneCards Identifiers for C16orf78 Gene

  • GC16P047966
  • GC16P049407
  • GC16P035297

Summaries for C16orf78 Gene

GeneCards Summary for C16orf78 Gene

C16orf78 (Chromosome 16 Open Reading Frame 78) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C16orf78 Gene

Genomics for C16orf78 Gene

Regulatory Elements for C16orf78 Gene

Genomic Location for C16orf78 Gene

Start:
49,373,823 bp from pter
End:
49,399,431 bp from pter
Size:
25,609 bases
Orientation:
Plus strand

Genomic View for C16orf78 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C16orf78 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C16orf78 Gene

Proteins for C16orf78 Gene

  • Protein details for C16orf78 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WTQ4-CP078_HUMAN
    Recommended name:
    Uncharacterized protein C16orf78
    Protein Accession:
    Q8WTQ4
    Secondary Accessions:

    Protein attributes for C16orf78 Gene

    Size:
    265 amino acids
    Molecular mass:
    30819 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C16orf78 Gene

Proteomics data for C16orf78 Gene at MOPED

Post-translational modifications for C16orf78 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C16orf78 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C16orf78 Gene

Domains for C16orf78 Gene

Protein Domains for C16orf78 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C16orf78: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C16orf78 Gene

Function for C16orf78 Gene

Phenotypes for C16orf78 Gene

GenomeRNAi human phenotypes for C16orf78:
genes like me logo Genes that share phenotypes with C16orf78: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C16orf78

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C16orf78 Gene

Localization for C16orf78 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C16orf78 Gene COMPARTMENTS Subcellular localization image for C16orf78 gene
Compartment Confidence
nucleus 3
cytosol 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for C16orf78 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 21630459
genes like me logo Genes that share ontologies with C16orf78: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for C16orf78 Gene

Pathways for C16orf78 Gene

SuperPathways for C16orf78 Gene

No Data Available

Interacting Proteins for C16orf78 Gene

STRING Interaction Network Preview (showing 3 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000299191%0d%0a9606.ENSP00000377262%0d%0a9606.ENSP00000362931%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000299191 for C16orf78 Gene via STRING

Gene Ontology (GO) - Biological Process for C16orf78 Gene

None

No data available for Pathways by source for C16orf78 Gene

Transcripts for C16orf78 Gene

mRNA/cDNA for C16orf78 Gene

(13) Selected AceView cDNA sequences:
(2) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C16orf78 Gene

Chromosome 16 open reading frame 78:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C16orf78

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for C16orf78

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C16orf78 Gene

No ASD Table

Relevant External Links for C16orf78 Gene

GeneLoc Exon Structure for
C16orf78
ECgene alternative splicing isoforms for
C16orf78

Expression for C16orf78 Gene

mRNA expression in normal human tissues for C16orf78 Gene

mRNA differential expression in normal tissues according to GTEx for C16orf78 Gene

This gene is overexpressed in Testis (52.2).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for C16orf78 Gene

SOURCE GeneReport for Unigene cluster for C16orf78 Gene Hs.125875

genes like me logo Genes that share expressions with C16orf78: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for C16orf78 Gene

Orthologs for C16orf78 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C16orf78 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C16H16orf78 35
  • 97.73 (n)
  • 97.35 (a)
C16orf78 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C18H16orf78 35
  • 69.55 (n)
  • 58.44 (a)
C18H16orf78 36
  • 54 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C16orf78 36
  • 59 (a)
OneToOne
C2H16orf78 35
  • 70.74 (n)
  • 58.78 (a)
mouse
(Mus musculus)
Mammalia 4933402J07Rik 35
  • 65.87 (n)
  • 56.35 (a)
4933402J07Rik 16
4933402J07Rik 36
  • 50 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C16orf78 36
  • 34 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC680913 35
  • 65.07 (n)
  • 57.6 (a)
lizard
(Anolis carolinensis)
Reptilia C16orf78 36
  • 24 (a)
OneToOne
Species with no ortholog for C16orf78:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C16orf78 Gene

ENSEMBL:
Gene Tree for C16orf78 (if available)
TreeFam:
Gene Tree for C16orf78 (if available)

Paralogs for C16orf78 Gene

No data available for Paralogs for C16orf78 Gene

Variants for C16orf78 Gene

Sequence variations from dbSNP and Humsavar for C16orf78 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs27783 -- 49,378,697(+) TCCAC(A/G)TCAAT intron-variant
rs27795 -- 49,396,318(+) AGGTA(C/T)GGTTT intron-variant
rs27796 -- 49,397,138(+) GAAAC(A/C)ATTTG intron-variant
rs27797 -- 49,397,180(+) TCTCA(C/T)TTGCT intron-variant
rs27798 -- 49,398,815(+) TATAT(A/G)GCTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C16orf78 Gene

Variant ID Type Subtype PubMed ID
nsv833221 CNV Loss 17160897
nsv833222 CNV Loss 17160897
esv270983 CNV Insertion 20981092
esv272617 CNV Insertion 20981092
nsv1803 CNV Insertion 18451855

Relevant External Links for C16orf78 Gene

HapMap Linkage Disequilibrium report
C16orf78

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C16orf78 Gene

Disorders for C16orf78 Gene

Relevant External Links for C16orf78

Genetic Association Database (GAD)
C16orf78
genes like me logo Genes that share disorders with C16orf78: view

No data available for UniProtKB/Swiss-Prot for C16orf78 Gene

Publications for C16orf78 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  3. Proteomic characterization of the human sperm nucleus. (PMID: 21630459) de Mateo S. … Oliva R. (Proteomics 2011) 3
  4. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PMID: 21890473) Wagner S.A. … Choudhary C. (Mol. Cell Proteomics 2011) 3
  5. A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. (PMID: 22219177) Tao S. … Sun J. (Carcinogenesis 2012) 3

Products for C16orf78 Gene

Sources for C16orf78 Gene

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