C16orf72 Gene
protein-coding GIFtS: 41
GCID: GC16P009185
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|
chromosome 16 open reading frame 72
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Aliases
for C16orf72 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Chromosome 16 Open Reading Frame 721 2 | | PRO01491 2 | | FLJ412721 | | UPF0472 Protein C16orf722 |
Export aliases for C16orf72 gene to outside databasesPrevious GC identifers: GC16P009094 GC16P009106 |
Summaries
for C16orf72 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for C16orf72 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000016.9 NC_018927.1 NT_010393.16
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the C16orf72 gene promoter:
STAT5B STAT1 ATF-2 Lmo2 XBP-1 CREB deltaCREB c-Myb NF-kappaB1 Hlf
Other transcription factors
Search SABiosciences Chromatin IP Primers for C16orf72
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat C16orf72 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 16p13.2 Ensembl cytogenetic band: 16p13.2 HGNC cytogenetic band: 16p13.2C16orf72 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 16 GeneLoc Exon Structure GeneLoc location for GC16P009185: view genomic region
(about GC identifiers)
Start:
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9,185,505 bp from pter |
End:
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9,215,497 bp from pter |
Size:
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29,993 bases |
Orientation:
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plus strand |
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Proteins
for C16orf72 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: CP072_HUMAN, Q14CZ0 (See
protein sequence)Recommended Name: UPF0472 protein C16orf72 Size: 275 amino acids; 30926 DaExplore the universe of human proteins at neXtProt for C16orf72: NX_Q14CZ0
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q14CZ0
C16orf72 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_054836.2
ENSEMBL proteins: ENSP00000331720
Human Recombinant Protein Products:
C16orf72 Antibody Products:
Assay Products for C16orf72: |
Protein
Domains /
Families
for C16orf72 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: Q14CZ0 UniProtKB/Swiss-Prot: CP072_HUMAN, Q14CZ0Similarity: Belongs to the UPF0472 family |
Function
for C16orf72 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for C16orf72 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for C16orf72
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: C16orf72 (NM_014117) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for C16orf72 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat C16orf72 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C16orf72 |
3 GenomeRNAi human phenotypes for C16orf72:
|
Pathways & Interactions
for C16orf72 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for C16orf72
STRING Interaction
Network Preview (showing 1 interactants - click image to see more details)
1 Interacting protein for C16orf72 (ENSP000003317204) via UniProtKB, MINT, STRING, and/or I2DAbout this table
|
Drugs & Compounds
for C16orf72 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for C16orf72
Search CenterWatch for drugs/clinical trials and news about C16orf72 / CP072
|
Transcripts
for C16orf72 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for C16orf72 gene: NM_014117.2 Unigene Cluster for C16orf72: Chromosome 16 open reading frame 72 Hs.221497 [show with all ESTs]Unigene Representative Sequence: NM_0141171 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000327827(uc002czm.3)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for C16orf72 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for C16orf72
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: C16orf72 (NM_014117) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for C16orf72 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat C16orf72 |
Additional cDNA sequence: AK123266.1 BC029878.1 BC113570.1 9 DOTS entries: DT.100778406 DT.86847523 DT.97814012 DT.120655190 DT.454573 DT.91766604 DT.97794124 DT.91766608 DT.95277839 24/489 AceView cDNA sequences (see all 489): AA693914 BI030370 AA885979 BU677468 AL138239 BF477717 BQ228174 AW440767 AI273927 AA609326 AL601306 BM126406 AA326856 AI002331 BQ129338 BM967198 AI657192 AK123266 AI064814 AA768370 BM127137 AW440749 BF109763 AA393428
GeneLoc Exon Structure
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Expression
for C16orf72 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| C16orf72 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CGTTTGGAGT
About this image
See C16orf72 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for C16orf72
SOURCE GeneReport for Unigene cluster: Hs.221497
SABiosciences Custom PCR Arrays for C16orf72
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for C16orf72
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat C16orf72 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat C16orf72 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat C16orf72 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C16orf72 |
Orthologs
for C16orf72 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for C16orf72 gene from 6/19 species (see all 19) About this table
ENSEMBL Gene Tree for C16orf72 (if available)
TreeFam Gene Tree for C16orf72 (if available) |
Paralogs
for C16orf72 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for C16orf72 gene
C16orf72 for paralogs About GeneDecksing
1 Pseudogenes.org Pseudogene for C16orf72
PGOHUM00000242048
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Genomic Variants
for C16orf72 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 16 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for C16orf72 (9185505 - 9215497 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for C16orf72: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing C16orf72 |
|
Disorders
/ Diseases
for C16orf72 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
C16orf72 for disorders About GeneDecksing
1  disease for C16orf72: About MalaCardswilliams-beuren syndrome
2 diseases from the University of Copenhagen DISEASES database for C16orf72:Williams-Beuren syndrome Schizoaffective disorder Human Genome Epidemiology (HuGE) Navigator: C16orf72 (1 document)
Export disorders for C16orf72 gene to outside databases
|
Publications
for C16orf72 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for C16orf72 gene integrated from 9 sources:
(articles sorted by number of sources associating them with C16orf72) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Normalization and subtraction: two approaches to facilitate gene discovery. (PubMed id 8889548)1, 3 Bonaldo M.F.... Soares M.B. (1996)
- Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201)1 Abdelmohsen K....Gorospe M. (2009)
- A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)2 Dephoure N.... Gygi S.P. (2008)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
|
External Searches for C16orf72 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing C16orf72 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing C16orf72 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing C16orf72 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for C16orf72 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for C16orf72 gene:
Search GeneIP for patents involving C16orf72
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for C16orf72 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
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| | |  | OriGene Antibodies for C16orf72 | | OriGene shRNA RFP for C16orf72 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for C16orf72 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for C16orf72 | | | OriGene Protein Over-expression Lysate for C16orf72 | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for C16orf72 | | OriGene 3'-UTR Clone for C16orf72 | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for C16orf72 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for C16orf72 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | OriGene Purified Protein for C16orf72 | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for C16orf72 | | OriGene Custom Protein Services for C16orf72 | | | OriGene Custom Immunoassay Development | | |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat C16orf72 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing C16orf72 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat C16orf72 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat C16orf72 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat C16orf72 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat C16orf72 |
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 | | | C16orf72 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C16orf72 |
|  |  |  | | | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat C16orf72 |
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