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Aliases for C16orf72 Gene

Aliases for C16orf72 Gene

  • Chromosome 16 Open Reading Frame 72 2 3
  • UPF0472 Protein C16orf72 3
  • PRO0149 3

External Ids for C16orf72 Gene

Summaries for C16orf72 Gene

GeneCards Summary for C16orf72 Gene

C16orf72 (Chromosome 16 Open Reading Frame 72) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C16orf72 Gene

Genomics for C16orf72 Gene

Genomic Location for C16orf72 Gene

Start:
9,091,648 bp from pter
End:
9,121,640 bp from pter
Size:
29,993 bases
Orientation:
Plus strand

Genomic View for C16orf72 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C16orf72 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C16orf72 Gene

Regulatory Elements for C16orf72 Gene

Proteins for C16orf72 Gene

  • Protein details for C16orf72 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q14CZ0-CP072_HUMAN
    Recommended name:
    UPF0472 protein C16orf72
    Protein Accession:
    Q14CZ0
    Secondary Accessions:

    Protein attributes for C16orf72 Gene

    Size:
    275 amino acids
    Molecular mass:
    30926 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C16orf72 Gene

Proteomics data for C16orf72 Gene at MOPED

Post-translational modifications for C16orf72 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C16orf72 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C16orf72 Gene

Domains for C16orf72 Gene

Protein Domains for C16orf72 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

CP072_HUMAN
Family:
  • Belongs to the UPF0472 family.:
    • Q14CZ0
genes like me logo Genes that share domains with C16orf72: view

No data available for Gene Families for C16orf72 Gene

Function for C16orf72 Gene

Gene Ontology (GO) - Molecular Function for C16orf72 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with C16orf72: view

Phenotypes for C16orf72 Gene

genes like me logo Genes that share phenotypes with C16orf72: view

miRNA for C16orf72 Gene

miRTarBase miRNAs that target C16orf72

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for C16orf72 Gene

Localization for C16orf72 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C16orf72 Gene COMPARTMENTS Subcellular localization image for C16orf72 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Gene Ontology (GO) - Cellular Components for C16orf72 Gene

Pathways for C16orf72 Gene

SuperPathways for C16orf72 Gene

No Data Available

Interacting Proteins for C16orf72 Gene

STRING Interaction Network Preview (showing 3 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000331720%0d%0a9606.ENSP00000318716%0d%0a9606.ENSP00000385269%0d%0a9606.ENSP00000262854%0d%0a
Selected Interacting proteins: ENSP00000331720 Q14CZ0-CP072_HUMAN for C16orf72 Gene via STRING UniProtKB

Gene Ontology (GO) - Biological Process for C16orf72 Gene

None

No data available for Pathways by source for C16orf72 Gene

Transcripts for C16orf72 Gene

mRNA/cDNA for C16orf72 Gene

Unigene Clusters for C16orf72 Gene

Chromosome 16 open reading frame 72:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C16orf72 Gene

No ASD Table

Relevant External Links for C16orf72 Gene

GeneLoc Exon Structure for
C16orf72
ECgene alternative splicing isoforms for
C16orf72

Expression for C16orf72 Gene

mRNA expression in normal human tissues for C16orf72 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C16orf72 Gene

This gene is overexpressed in Whole Blood (4.4).

SOURCE GeneReport for Unigene cluster for C16orf72 Gene Hs.221497

genes like me logo Genes that share expressions with C16orf72: view

Orthologs for C16orf72 Gene

This gene was present in the common ancestor of animals.

Orthologs for C16orf72 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C16H16orf72 36
  • 99.24 (n)
  • 98.46 (a)
C16orf72 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C25H16orf72 36
  • 97.7 (n)
  • 100 (a)
C25H16ORF72 37
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C16orf72 37
  • 83 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 1810013L24Rik 36
  • 97.09 (n)
  • 98.55 (a)
1810013L24Rik 16
1810013L24Rik 37
  • 99 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C16orf72 37
  • 97 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C16orf72 37
  • 95 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1309748 36
  • 96.24 (n)
  • 98.55 (a)
chicken
(Gallus gallus)
Aves C16orf72 37
  • 94 (a)
OneToOne
LOC416639 36
  • 88.03 (n)
  • 91.12 (a)
lizard
(Anolis carolinensis)
Reptilia C16orf72 37
  • 82 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia MGC68553 36
tropical clawed frog
(Silurana tropicalis)
Amphibia c16orf72 36
  • 84.38 (n)
  • 92.91 (a)
Str.5950 36
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.3294 36
zebrafish
(Danio rerio)
Actinopterygii C3H16orf72 37
  • 83 (a)
OneToOne
wufb59e09 36
zgc:77849 36
  • 75.63 (n)
  • 86.56 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG4768 37
  • 32 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.11201 37
  • 44 (a)
OneToOne
Species with no ortholog for C16orf72:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C16orf72 Gene

ENSEMBL:
Gene Tree for C16orf72 (if available)
TreeFam:
Gene Tree for C16orf72 (if available)

Paralogs for C16orf72 Gene

Pseudogenes.org Pseudogenes for C16orf72 Gene

genes like me logo Genes that share paralogs with C16orf72: view

No data available for Paralogs for C16orf72 Gene

Variants for C16orf72 Gene

Sequence variations from dbSNP and Humsavar for C16orf72 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs6777 -- 9,119,562(+) TGTTT(A/C)ATATT utr-variant-3-prime
rs9039 -- 9,111,506(-) TACAC(A/G)GAAAA intron-variant
rs11450 -- 9,111,505(-) ACACA(A/G)AAAAT intron-variant
rs13543 -- 9,118,166(+) TTTTT(A/T)GATGA utr-variant-3-prime
rs1048687 -- 9,119,130(+) GAATT(C/T)GTCAC utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for C16orf72 Gene

Variant ID Type Subtype PubMed ID
dgv2600n71 CNV Gain 21882294
nsv457400 CNV Gain 19166990
nsv525864 CNV Loss 19592680
nsv457401 CNV Gain 19166990
nsv519065 CNV Gain 19592680
nsv457402 CNV Gain 19166990

Relevant External Links for C16orf72 Gene

HapMap Linkage Disequilibrium report
C16orf72

Disorders for C16orf72 Gene

(2) University of Copenhagen DISEASES for C16orf72 Gene

Relevant External Links for C16orf72

Genetic Association Database (GAD)
C16orf72
Human Genome Epidemiology (HuGE) Navigator
C16orf72
genes like me logo Genes that share disorders with C16orf72: view

No data available for UniProtKB/Swiss-Prot for C16orf72 Gene

Publications for C16orf72 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 2 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K. … Gorospe M. (EMBO J. 2009) 3
  5. A genome-wide association study of behavioral disinhibition. (PMID: 23942779) McGue M. … Iacono W.G. (Behav. Genet. 2013) 3

Products for C16orf72 Gene

Sources for C16orf72 Gene

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