Free for academic non-profit institutions. Other users need a Commercial license

Aliases for C16orf71 Gene

Aliases for C16orf71 Gene

  • Chromosome 16 Open Reading Frame 71 2 3

External Ids for C16orf71 Gene

Summaries for C16orf71 Gene

GeneCards Summary for C16orf71 Gene

C16orf71 (Chromosome 16 Open Reading Frame 71) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C16orf71 Gene

Genomics for C16orf71 Gene

Genomic Location for C16orf71 Gene

Start:
4,734,272 bp from pter
End:
4,749,396 bp from pter
Size:
15,125 bases
Orientation:
Plus strand

Genomic View for C16orf71 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C16orf71 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C16orf71 Gene

Regulatory Elements for C16orf71 Gene

Proteins for C16orf71 Gene

  • Protein details for C16orf71 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IYS4-CP071_HUMAN
    Recommended name:
    Uncharacterized protein C16orf71
    Protein Accession:
    Q8IYS4
    Secondary Accessions:
    • Q8NCV0

    Protein attributes for C16orf71 Gene

    Size:
    520 amino acids
    Molecular mass:
    55682 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C16orf71 Gene

Proteomics data for C16orf71 Gene at MOPED

Post-translational modifications for C16orf71 Gene

No Post-translational modifications

Other Protein References for C16orf71 Gene

No data available for DME Specific Peptides for C16orf71 Gene

Domains for C16orf71 Gene

Protein Domains for C16orf71 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C16orf71: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C16orf71 Gene

Function for C16orf71 Gene

miRNA for C16orf71 Gene

miRTarBase miRNAs that target C16orf71

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C16orf71 Gene

Localization for C16orf71 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C16orf71 Gene COMPARTMENTS Subcellular localization image for C16orf71 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C16orf71 Gene

Pathways for C16orf71 Gene

SuperPathways for C16orf71 Gene

No Data Available

Interacting Proteins for C16orf71 Gene

Gene Ontology (GO) - Biological Process for C16orf71 Gene

None

No data available for Pathways by source for C16orf71 Gene

Transcripts for C16orf71 Gene

Unigene Clusters for C16orf71 Gene

Chromosome 16 open reading frame 71:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C16orf71 Gene

No ASD Table

Relevant External Links for C16orf71 Gene

GeneLoc Exon Structure for
C16orf71
ECgene alternative splicing isoforms for
C16orf71

Expression for C16orf71 Gene

mRNA expression in normal human tissues for C16orf71 Gene

mRNA differential expression in normal tissues according to GTEx for C16orf71 Gene

This gene is overexpressed in Testis (34.6).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C16orf71 Gene

SOURCE GeneReport for Unigene cluster for C16orf71 Gene Hs.602738

genes like me logo Genes that share expressions with C16orf71: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for C16orf71 Gene

Orthologs for C16orf71 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C16orf71 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C16H16orf71 35
  • 99.04 (n)
  • 97.69 (a)
C16orf71 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C25H16ORF71 36
  • 52 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C16orf71 36
  • 55 (a)
OneToOne
C6H16orf71 35
  • 71.59 (n)
  • 59.48 (a)
mouse
(Mus musculus)
Mammalia 4930451G09Rik 16
4930451G09Rik 36
  • 48 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C16orf71 36
  • 31 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C16orf71 36
  • 32 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC360479 35
  • 65.71 (n)
  • 52.11 (a)
lizard
(Anolis carolinensis)
Reptilia C16orf71 36
  • 24 (a)
OneToOne
Species with no ortholog for C16orf71:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C16orf71 Gene

ENSEMBL:
Gene Tree for C16orf71 (if available)
TreeFam:
Gene Tree for C16orf71 (if available)

Paralogs for C16orf71 Gene

No data available for Paralogs for C16orf71 Gene

Variants for C16orf71 Gene

Sequence variations from dbSNP and Humsavar for C16orf71 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs737697 -- 4,746,191(+) GCCAG(C/T)GGTGG intron-variant
rs737698 -- 4,746,083(+) TTTAT(G/T)CATTG intron-variant
rs737700 - 4,746,392(+) GAAGC(A/G)GGGCT reference, missense
rs741693 -- 4,745,539(+) TATAT(A/G)CCTGC intron-variant
rs741694 -- 4,745,553(+) CCCCA(C/G)ACTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C16orf71 Gene

Variant ID Type Subtype PubMed ID
dgv2588n71 CNV Loss 21882294
dgv2589n71 CNV Loss 21882294
dgv2590n71 CNV Loss 21882294
nsv905248 CNV Loss 21882294
nsv905250 CNV Loss 21882294
esv2657180 CNV Deletion 23128226

Relevant External Links for C16orf71 Gene

HapMap Linkage Disequilibrium report
C16orf71

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C16orf71 Gene

Disorders for C16orf71 Gene

No disorders were found for C16orf71 Gene.

No data available for UniProtKB/Swiss-Prot for C16orf71 Gene

Publications for C16orf71 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  3. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 4

Products for C16orf71 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate C16orf71
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for C16orf71
    • Block miRNA regulation of C16orf71 using miScript Target Protectors

    Sources for C16orf71 Gene

    Back to Top

    Content