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Aliases for C16orf70 Gene

Aliases for C16orf70 Gene

  • Chromosome 16 Open Reading Frame 70 2 3
  • C16orf6 3 4
  • Chromosome 16 Open Reading Frame 6 2
  • UPF0183 Protein C16orf70 3
  • Lin-10 Homolog 3
  • LIN-10 3
  • LIN10 3

External Ids for C16orf70 Gene

Previous HGNC Symbols for C16orf70 Gene

  • C16orf6
  • LIN10

Previous GeneCards Identifiers for C16orf70 Gene

  • GC16P065703
  • GC16P053017

Summaries for C16orf70 Gene

GeneCards Summary for C16orf70 Gene

C16orf70 (Chromosome 16 Open Reading Frame 70) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C16orf70 Gene

Genomics for C16orf70 Gene

Regulatory Elements for C16orf70 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for C16orf70 Gene

Start:
67,109,899 bp from pter
End:
67,148,539 bp from pter
Size:
38,641 bases
Orientation:
Plus strand

Genomic View for C16orf70 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C16orf70 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C16orf70 Gene

Proteins for C16orf70 Gene

  • Protein details for C16orf70 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BSU1-CP070_HUMAN
    Recommended name:
    UPF0183 protein C16orf70
    Protein Accession:
    Q9BSU1
    Secondary Accessions:
    • Q9HA86

    Protein attributes for C16orf70 Gene

    Size:
    422 amino acids
    Molecular mass:
    47524 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C16orf70 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C16orf70 Gene

Proteomics data for C16orf70 Gene at MOPED

Post-translational modifications for C16orf70 Gene

  • Ubiquitination at Lys231
  • Modification sites at PhosphoSitePlus

Other Protein References for C16orf70 Gene

No data available for DME Specific Peptides for C16orf70 Gene

Domains for C16orf70 Gene

Protein Domains for C16orf70 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for C16orf70 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BSU1

UniProtKB/Swiss-Prot:

CP070_HUMAN :
  • Q9BSU1
Family:
  • Belongs to the UPF0183 family.
genes like me logo Genes that share domains with C16orf70: view

No data available for Gene Families for C16orf70 Gene

Function for C16orf70 Gene

Gene Ontology (GO) - Molecular Function for C16orf70 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16713569
genes like me logo Genes that share ontologies with C16orf70: view

Animal Model Products

CRISPR Products

miRNA for C16orf70 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C16orf70

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C16orf70 Gene

Localization for C16orf70 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C16orf70 Gene COMPARTMENTS Subcellular localization image for C16orf70 gene
Compartment Confidence
cytosol 2
nucleus 2
golgi apparatus 1
mitochondrion 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C16orf70 Gene

Pathways for C16orf70 Gene

SuperPathways for C16orf70 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C16orf70 Gene

None

No data available for Pathways by source for C16orf70 Gene

Transcripts for C16orf70 Gene

Unigene Clusters for C16orf70 Gene

Chromosome 16 open reading frame 70:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C16orf70

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C16orf70 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16 ^ 17
SP1: - -
SP2: - - -
SP3: -
SP4:
SP5:

Relevant External Links for C16orf70 Gene

GeneLoc Exon Structure for
C16orf70
ECgene alternative splicing isoforms for
C16orf70

Expression for C16orf70 Gene

mRNA expression in normal human tissues for C16orf70 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C16orf70 Gene

SOURCE GeneReport for Unigene cluster for C16orf70 Gene Hs.513666

genes like me logo Genes that share expressions with C16orf70: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C16orf70 Gene

Orthologs for C16orf70 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for C16orf70 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C16H16orf70 35
  • 97.38 (n)
  • 96.9 (a)
C16ORF70 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C16orf70 36
  • 97 (a)
OneToOne
C18H16orf70 35
  • 92.42 (n)
  • 98.13 (a)
dog
(Canis familiaris)
Mammalia C16orf70 36
  • 99 (a)
OneToOne
C5H16orf70 35
  • 94.71 (n)
  • 98.58 (a)
mouse
(Mus musculus)
Mammalia D230025D16Rik 35
  • 92.02 (n)
  • 96.92 (a)
D230025D16Rik 16
D230025D16Rik 36
  • 97 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C16orf70 36
  • 95 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C16orf70 36
  • 94 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD621098 35
  • 92.18 (n)
  • 97.63 (a)
chicken
(Gallus gallus)
Aves C11H16ORF70 35
  • 83.57 (n)
  • 94.55 (a)
C11H16ORF70 36
  • 94 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C16orf70 36
  • 87 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100494115 35
  • 77.22 (n)
  • 85.48 (a)
zebrafish
(Danio rerio)
Actinopterygii C18H16orf70 36
  • 87 (a)
OneToOne
si:dkey-102f14.5 35
  • 76.35 (n)
  • 88.1 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP003820 35
  • 58.66 (n)
  • 57.43 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG7083 35
  • 57.17 (n)
  • 56.76 (a)
CG7083 36
  • 52 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea T01G9.2 35
  • 46.38 (n)
  • 38.62 (a)
T01G9.2 36
  • 36 (a)
OneToOne
thale cress
(Arabidopsis thaliana)
eudicotyledons AT3G51130 35
  • 49.86 (n)
  • 38.38 (a)
rice
(Oryza sativa)
Liliopsida Os06g0714000 35
  • 49.28 (n)
  • 38.86 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.69 35
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 61 (a)
OneToMany
CSA.1238 36
  • 59 (a)
OneToMany
Species with no ortholog for C16orf70:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for C16orf70 Gene

ENSEMBL:
Gene Tree for C16orf70 (if available)
TreeFam:
Gene Tree for C16orf70 (if available)

Paralogs for C16orf70 Gene

Pseudogenes.org Pseudogenes for C16orf70 Gene

genes like me logo Genes that share paralogs with C16orf70: view

No data available for Paralogs for C16orf70 Gene

Variants for C16orf70 Gene

Sequence variations from dbSNP and Humsavar for C16orf70 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs786359 -- 67,131,136(+) AGAAC(A/C)AAAGA intron-variant
rs810860 -- 67,139,222(+) cggcc(A/C)AGAAG intron-variant
rs964867 -- 67,132,017(-) AAAGG(A/G)AAGCC intron-variant
rs1152084 -- 67,137,959(+) TCCTT(C/T)CTTAT intron-variant
rs1811747 -- 67,136,505(-) TAAAT(G/T)CTGGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C16orf70 Gene

Variant ID Type Subtype PubMed ID
dgv2885n71 CNV Loss 21882294
nsv906794 CNV Loss 21882294
nsv509627 CNV Insertion 20534489
dgv2886n71 CNV Loss 21882294
dgv2887n71 CNV Loss 21882294
dgv2888n71 CNV Loss 21882294
nsv524363 CNV Loss 19592680
nsv827707 CNV Loss 20364138

Relevant External Links for C16orf70 Gene

HapMap Linkage Disequilibrium report
C16orf70

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C16orf70 Gene

Disorders for C16orf70 Gene

Relevant External Links for C16orf70

Genetic Association Database (GAD)
C16orf70
Human Genome Epidemiology (HuGE) Navigator
C16orf70
genes like me logo Genes that share disorders with C16orf70: view

No data available for UniProtKB/Swiss-Prot for C16orf70 Gene

Publications for C16orf70 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Association between genetic variants in VEGF, ERCC3 and occupational benzene haematotoxicity. (PMID: 19773279) Hosgood H.D. … Lan Q. (Occup Environ Med 2009) 3 48
  5. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey S.D. … Anand S. (Diabetes Care 2010) 3 48

Products for C16orf70 Gene

Sources for C16orf70 Gene

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