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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

C16orf62 Gene

protein-coding   GIFtS: 44
GCID: GC16P019566

Chromosome 16 Open Reading Frame 62

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Chromosome 16 Open Reading Frame 621 2
Esophageal Cancer-Associated Protein2 3
Esophageal Cancer Associated Protein2
UPF0505 Protein C16orf622

External Ids:    HGNC: 246411   Entrez Gene: 570202   Ensembl: ENSG000001035447   UniProtKB: Q7Z3J23   

Export aliases for C16orf62 gene to outside databases

Previous GC identifers: GC16P019475 GC16P019476 GC16P018103


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for C16orf62 Gene: 
C16orf62 (chromosome 16 open reading frame 62) is a protein-coding gene. Diseases associated with C16orf62 include esophageal cancer, and esophagitis.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000016.9  NT_010393.16  NC_018927.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the C16orf62 gene promoter:
         ISGF-3   RP58   Pax-5   POU3F2   POU2F1   FOXJ2 (long isoform)   POU2F1a   FOXJ2   En-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidC16orf62 promoter sequence
   Search SABiosciences Chromatin IP Primers for C16orf62

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat C16orf62


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 16p12.3   Ensembl cytogenetic band:  16p12.3   HGNC cytogenetic band: 16p12.3

C16orf62 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
C16orf62 gene location

GeneLoc information about chromosome 16         GeneLoc Exon Structure

GeneLoc location for GC16P019566:  view genomic region     (about GC identifiers)

Start:
19,566,562 bp from pter      End:
19,718,115 bp from pter
Size:
151,554 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: CP062_HUMAN, Q7Z3J2 (See protein sequence)
Recommended Name: UPF0505 protein C16orf62  
Size: 963 amino acids; 109563 Da
Subcellular location: Membrane; Single-pass membrane protein (Potential)
Sequence caution: Sequence=AAH14900.2; Type=Erroneous initiation; Sequence=CAD97869.1; Type=Erroneous initiation;
Secondary accessions: A8K2M1 O43329 Q69YI1 Q6PDA0 Q7L371 Q86W66 Q8WXA5 Q9H0L7 Q9H7C8
Alternative splicing: 2 isoforms:  Q7Z3J2-1   Q7Z3J2-2   

Explore the universe of human proteins at neXtProt for C16orf62: NX_Q7Z3J2

Explore proteomics data for C16orf62 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q7Z3J2

  • C16orf62 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    C16orf62 Protein Expression
    REFSEQ proteins: NP_064710.4  
    ENSEMBL proteins: 
     ENSP00000456425   ENSP00000438852   ENSP00000400815   ENSP00000442468   ENSP00000438557  
     ENSP00000455045   ENSP00000458116   ENSP00000457190   ENSP00000457973   ENSP00000459108  
     ENSP00000457779   ENSP00000444363   ENSP00000251143   ENSP00000395973   ENSP00000398009  

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    Novus Biologicals C16orf62 Lysate
    Browse Sino Biological Recombinant Proteins
    Browse Sino Biological Cell Lysates 
    Browse ProSpec Recombinant Proteins
    Cloud-Clone Corp. Proteins for C16orf62 

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016021integral to membrane IEA--

    C16orf62 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ProtoNet protein and cluster: Q7Z3J2

    UniProtKB/Swiss-Prot: CP062_HUMAN, Q7Z3J2
    Similarity: Belongs to the UPF0505 family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Phenotypes:
         2 GenomeRNAi human phenotypes for C16orf62:
     Increased S DNA content  Increased cell size 

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for C16orf62 
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    miRNA
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    2 QIAGEN miScript miRNA Assays for microRNAs that regulate C16orf62:
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    SwitchGear 3'UTR luciferase reporter plasmidC16orf62 3' UTR sequence
    Inhib. RNA
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C16orf62


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for C16orf62

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for C16orf62 (ENSP000002511434) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    UBCENSP000003448184STRING: ENSP00000344818
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for C16orf62 (CP062)

    Search CenterWatch for drugs/clinical trials and news about C16orf62 / CP062

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for C16orf62 gene: 
    NM_020314.5  

    Unigene Cluster for C16orf62:

    Chromosome 16 open reading frame 62
    Hs.654964  [show with all ESTs]
    Unigene Representative Sequence: NM_020314
    18/25 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 25):
    ENST00000544670 ENST00000539322 ENST00000438132(uc010vas.2 uc002dgn.2 uc002dgo.2)
    ENST00000542263 ENST00000537186 ENST00000543460 ENST00000567245 ENST00000513947(uc002dgm.2)
    ENST00000563649 ENST00000543152(uc002dgp.2) ENST00000562446 ENST00000546175
    ENST00000535164 ENST00000539705 ENST00000541153 ENST00000538552 ENST00000540240
    ENST00000540101
    miRNA
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    2 QIAGEN miScript miRNA Assays for microRNAs that regulate C16orf62:
    hsa-miR-558 hsa-miR-335
    SwitchGear 3'UTR luciferase reporter plasmidC16orf62 3' UTR sequence
    Inhib. RNA
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    Browse for Gene Knock-down Tools from EMD Millipore
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                         Customized lentivirus expression plasmids for stable overexpression of C16orf62 
    Primer
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    OriGene qPCR primer pairs and template standards for C16orf62
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat C16orf62
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat C16orf62

    Additional mRNA sequence: 

    AF461052.2 AK024693.1 AK095078.1 AK290286.1 AK294885.1 AL136744.1 AL832159.1 AL833428.1 
    BC014900.2 BC050464.1 BC058845.1 BX537867.1 

    24/28 DOTS entries (see all 28):

    DT.97858785  DT.100794898  DT.414746  DT.95192660  DT.100794901  DT.100794900  DT.120673388  DT.97787378 
    DT.99948793  DT.91751497  DT.100743539  DT.120673314  DT.40124356  DT.120673333  DT.91812777  DT.95316584 
    DT.100794897  DT.100794899  DT.120673206  DT.120673357  DT.120673381  DT.91980899  DT.95145222  DT.97813747 

    24/247 AceView cDNA sequences (see all 247):

    AA573600 CR590873 BU732688 AI701600 AL136744 CA445510 AK095078 BM670543 
    BE792604 BU166680 BU507976 BQ026754 CA435199 CF125940 CB851449 BE550687 
    BC014900 AL704869 AK024693 BX537867 BM904708 AW264049 AW070952 AA746106 

    GeneLoc Exon Structure

    5/7 Alternative Splicing Database (ASD) splice patterns (SP) for C16orf62 (see all 7)    About this scheme

    ExUns: 1 ^ 2 ^ 3a · 3b ^ 4a · 4b · 4c ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^
    SP1:              -                       -           -                                   -                       -                                             
    SP2:              -                       -           -                                   -                       -     -     -                                 
    SP3:                                                                                      -                                                                     
    SP4:                                                                                                                                                            
    SP5:              -                                                                                                                                             

    ExUns: 21 ^ 22 ^ 23 ^ 24 ^ 25 ^ 26 ^ 27 ^ 28 ^ 29 ^ 30 ^ 31 ^ 32
    SP1:                                                                        
    SP2:                                -                                       
    SP3:                                                                        
    SP4:                                                                        
    SP5:                                                                        


    ECgene alternative splicing isoforms for C16orf62

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    C16orf62 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: ACTCATCTGA
    C16orf62 Expression
    About this image


    See C16orf62 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for C16orf62

    SOURCE GeneReport for Unigene cluster: Hs.654964
        SABiosciences Custom PCR Arrays for C16orf62
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for C16orf62 gene from 8/19 species (see all 19)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia 9030624J02Rik1 , 5 RIKEN cDNA 9030624J02 gene1, 5 86.23(n)1
    92.31(a)1
      7 (63.61 cM)5
    715171  NM_027815.41  NP_082091.31 
     1187402265 
    chicken
    (Gallus gallus)
    Aves C14H16orf621 chromosome 14 open reading frame, human C16orf62 77.12(n)
    86.29(a)
      426995  XM_424599.3  XP_424599.3 
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    Uncharacterized protein
    88(a)
    82(a)
    many → 1
    many → 1
    GL344359.1(600-41922)
    GL344346.1(29441-38098)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.196232 Xenopus laevis transcribed sequence with moderate similarity more 81.98(n)    BJ039545.1 
    zebrafish
    (Danio rerio)
    Actinopterygii zgc:1631071 zgc:163107 69.2(n)
    74.04(a)
      563454  NM_001098181.1  NP_001091651.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG82021 CG8202 52.1(n)
    44.73(a)
      41043  NM_141569.3  NP_649826.3 
    worm
    (Caenorhabditis elegans)
    Secernentea CELE_F26G1.11 Protein F26G1.1 39.01(n)
    24.07(a)
      173826  NM_062458.3  NP_494859.2 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT1G507301 hypothetical protein 42.6(n)
    25.49(a)
      841495  NM_103955.2  NP_175488.2 


    ENSEMBL Gene Tree for C16orf62 (if available)
    TreeFam Gene Tree for C16orf62 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/3409 SNPs in C16orf62 are shown (see all 3409)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 16 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs362256851,2
    C--18137967(+) CCCCG-/CCC/CCCCC/C
    CCCCC
    /CCCCCCC
    CCCCC
    2 -- int1 cds11NA 2
    rs796768261,2
    F--19565245(+) AAAAGA/TAACAG 1 -- us2k11Minor allele frequency- T:0.33NA 6
    rs1513035101,2
    --19565295(+) ATCATC/TCTTTA 1 -- us2k10--------
    rs1405264091,2
    --19565339(+) TATGTC/TCCCTG 1 -- us2k10--------
    rs2017739911,2
    C--19565614(+) AAGAA-/TCCTCCTC 1 -- us2k10--------
    rs1869706641,2
    --19565773(+) CCAGTG/TTTGGG 1 -- us2k10--------
    rs169721741,2
    C,F--19565806(+) ACTTTC/TCTACT 1 -- us2k19Minor allele frequency- T:0.24NA WA EA 506
    rs1902083381,2
    --19565847(+) CTGGAA/GATGAT 1 -- us2k10--------
    rs47822561,2
    C,F,A,H--19565902(+) CACCAC/ACCCCG 1 -- us2k116Minor allele frequency- A:0.28NS EA NA WA 2338
    rs596819101,2
    C--19566005(+) AAAAAA/TTTTTT 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for C16orf62 (19566562 - 19718115 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 4 variations for C16orf62:    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv1756CNV Insertion18451855
    nsv436835CNV Insertion17901297
    nsv520441CNV Loss19592680
    nsv833163CNV Gain17160897

    SABiosciences Cancer Mutation PCR Assays
    SeqTarget long-range PCR primers for resequencing C16orf62
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    3 diseases for C16orf62:    About MalaCards
    esophageal cancer    esophagitis    obesity


    C16orf62 for disorders           About GeneDecksing

    Genetic Association Database (GAD): C16orf62
    Human Genome Epidemiology (HuGE) Navigator: C16orf62 (5 documents)

    Export disorders for C16orf62 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for C16orf62 gene, integrated from 9 sources (see all 17):
    (articles sorted by number of sources associating them with C16orf62)
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    1. Genome duplications and other features in 12 Mb of DNA sequence from human chromosome 16p and 16q. (PubMed id 10493829)1, 2, 3 Loftus B.J.... Adams M.D. (1999)
    2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1, 4 Rose J.E....Uhl G.R. (2010)
    3. Use of genome-wide expression data to mine the ' Gray Zone' of GWA studies leads to novel candidate obesity genes. (PubMed id 20532202)1, 4 Naukkarinen J....Peltonen L. (2010)
    4. Variation at the NFATC2 locus increases the risk of t hiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipr il and rosiglitazone Medication (DREAM) study. (PubMed id 20628086)1, 4 Bailey S.D....Anand S. (2010)
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    6. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PubMed id 11230166)1, 2 Wiemann S.... Poustka A. (2001)
    7. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
    8. A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (2011)
    9. Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)
    10. Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 57020 HGNC: 24641 AceView: MGC16824 Ensembl:ENSG00000103544 euGenes: HUgn57020
    ECgene: C16orf62 H-InvDB: C16orf62

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for C16orf62 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for C16orf62 gene:
    Search GeneIP for patents involving C16orf62

    GeneCards and IP:
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