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Aliases for C16orf58 Gene

Aliases for C16orf58 Gene

  • Chromosome 16 Open Reading Frame 58 2 3 5
  • RUS1 Homolog 2 3
  • RUS1 Family Protein C16orf58 3
  • UPF0420 Protein C16orf58 3
  • RUS 3

External Ids for C16orf58 Gene

Previous GeneCards Identifiers for C16orf58 Gene

  • GC16M031409
  • GC16M029061

Summaries for C16orf58 Gene

Entrez Gene Summary for C16orf58 Gene

  • This gene encodes a putative transmembrane protein containing a conserved DUF647 domain that may be involved in protein-protein interaction. The encoded protein is related to a plant protein that participates in ultraviolet B light-sensing during root morphogenesis. [provided by RefSeq, Feb 2013]

GeneCards Summary for C16orf58 Gene

C16orf58 (Chromosome 16 Open Reading Frame 58) is a Protein Coding gene. Diseases associated with C16orf58 include Acute Cystitis and Ureteral Disease.

Gene Wiki entry for C16orf58 Gene

Additional gene information for C16orf58 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C16orf58 Gene

Genomics for C16orf58 Gene

Regulatory Elements for C16orf58 Gene

Enhancers for C16orf58 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H030566 2.1 FANTOM5 Ensembl ENCODE dbSUPER 103 +939.4 939435 6 ZFP64 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 SP3 NFYC ZC3H11A SETD1A SRCAP ENSG00000260267 ZNF747 NPIPB13 INO80E ZNF764 C16orf58 SMG1P5 SMG1P2
GH16H030589 0.9 ENCODE 95 +918.8 918827 1 ZNF493 ZFP64 ZEB1 TCF12 ZNF121 ZNF23 ZNF138 KLF7 ZNF548 ZNF202 SETD1A SRCAP ENSG00000260267 NPIPB13 C16orf58 FUS INO80E ZNF764 ZNF747 SMG1P5
GH16H030785 1.1 ENCODE 41.8 +722.6 722572 3 MLX ZFP64 ARID4B SIN3A ZNF2 ZBTB7B YY1 SLC30A9 ZNF143 ZNF548 SRCAP SETD1A INO80E ENSG00000260267 SMG1P5 FUS ZNF764 ENSG00000260304 ZNF747 BCL7C
GH16H030995 1.1 ENCODE 34.7 +511.4 511402 4 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B DMAP1 YY1 SLC30A9 SETD1A SRCAP ENSG00000260267 C16orf58 ZNF747 BCL7C SMG1P5 ZNF764 NPIPB13 ENSG00000260304
GH16H031093 1.2 ENCODE 29.1 +414.7 414718 3 HDGF PKNOX1 FOXA2 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 SETD1A FUS ZNF785 ZNF720 ZNF747 SRCAP ZNF689 ZNF764 C16orf58 ENSG00000260267
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C16orf58 on UCSC Golden Path with GeneCards custom track

Promoters for C16orf58 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000085356 909 2001 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 ZNF207

Genomic Location for C16orf58 Gene

Chromosome:
16
Start:
31,489,469 bp from pter
End:
31,509,309 bp from pter
Size:
19,841 bases
Orientation:
Minus strand

Genomic View for C16orf58 Gene

Genes around C16orf58 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C16orf58 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C16orf58 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C16orf58 Gene

Proteins for C16orf58 Gene

  • Protein details for C16orf58 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96GQ5-RUS1_HUMAN
    Recommended name:
    RUS1 family protein C16orf58
    Protein Accession:
    Q96GQ5
    Secondary Accessions:
    • Q53GL8
    • Q8NAJ4
    • Q9BVY3
    • Q9H887

    Protein attributes for C16orf58 Gene

    Size:
    468 amino acids
    Molecular mass:
    51018 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C16orf58 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C16orf58 Gene

Post-translational modifications for C16orf58 Gene

  • Ubiquitination at Lys297, Lys376, posLast=433433, posLast=436436, and Lys466
  • Modification sites at PhosphoSitePlus

Other Protein References for C16orf58 Gene

No data available for DME Specific Peptides for C16orf58 Gene

Domains & Families for C16orf58 Gene

Gene Families for C16orf58 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted membrane proteins

Protein Domains for C16orf58 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C16orf58 Gene

Graphical View of Domain Structure for InterPro Entry

Q96GQ5

UniProtKB/Swiss-Prot:

RUS1_HUMAN :
  • Belongs to the RUS1 family.
Family:
  • Belongs to the RUS1 family.
genes like me logo Genes that share domains with C16orf58: view

Function for C16orf58 Gene

Phenotypes From GWAS Catalog for C16orf58 Gene

Phenotypes for C16orf58 Gene

genes like me logo Genes that share phenotypes with C16orf58: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for C16orf58
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C16orf58 Gene

Localization for C16orf58 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C16orf58 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C16orf58 gene
Compartment Confidence
nucleus 3
cytosol 3
golgi apparatus 2
plasma membrane 1
cytoskeleton 1
mitochondrion 1
peroxisome 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (2)
  • Golgi apparatus (2)
  • Nucleoli (2)
  • Nucleoplasm (2)
  • Vesicles (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for C16orf58 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IDA 19946888
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with C16orf58: view

Pathways & Interactions for C16orf58 Gene

SuperPathways for C16orf58 Gene

No Data Available

Interacting Proteins for C16orf58 Gene

Gene Ontology (GO) - Biological Process for C16orf58 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C16orf58 Gene

Drugs & Compounds for C16orf58 Gene

No Compound Related Data Available

Transcripts for C16orf58 Gene

Unigene Clusters for C16orf58 Gene

Chromosome 16 open reading frame 58:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for C16orf58
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for C16orf58 Gene

No ASD Table

Relevant External Links for C16orf58 Gene

GeneLoc Exon Structure for
C16orf58
ECgene alternative splicing isoforms for
C16orf58

Expression for C16orf58 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C16orf58 Gene

Protein differential expression in normal tissues from HIPED for C16orf58 Gene

This gene is overexpressed in Nasal epithelium (53.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for C16orf58 Gene



Protein tissue co-expression partners for C16orf58 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of C16orf58 Gene:

C16orf58

SOURCE GeneReport for Unigene cluster for C16orf58 Gene:

Hs.9003

Evidence on tissue expression from TISSUES for C16orf58 Gene

  • Nervous system(4.7)
  • Kidney(4.6)
  • Thyroid gland(4.3)
  • Intestine(2.4)
  • Gall bladder(2.2)
  • Lung(2)
  • Muscle(2)
genes like me logo Genes that share expression patterns with C16orf58: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for C16orf58 Gene

Orthologs for C16orf58 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for C16orf58 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C16H16orf58 33
  • 99.43 (n)
C16orf58 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C25H16orf58 33
  • 88.07 (n)
C16orf58 34
  • 82 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C6H16orf58 33
  • 86.54 (n)
C16orf58 34
  • 68 (a)
OneToOne
mouse
(Mus musculus)
Mammalia BC017158 33 16 34
  • 83.98 (n)
rat
(Rattus norvegicus)
Mammalia RGD1310127 33
  • 82.47 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia C16orf58 34
  • 70 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C16orf58 34
  • 68 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C16orf58 34
  • 52 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC101732099 33
  • 61.32 (n)
Str.20322 33
zebrafish
(Danio rerio)
Actinopterygii zgc:162613 33
  • 57.04 (n)
C3H16orf58 34
  • 50 (a)
OneToOne
Dr.12463 33
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.4481 33
fruit fly
(Drosophila melanogaster)
Insecta CG10338 33 34
  • 53.39 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP010020 33
  • 48.69 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons RUS3 33
  • 48.65 (n)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.5264 33
Species where no ortholog for C16orf58 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C16orf58 Gene

ENSEMBL:
Gene Tree for C16orf58 (if available)
TreeFam:
Gene Tree for C16orf58 (if available)

Paralogs for C16orf58 Gene

No data available for Paralogs for C16orf58 Gene

Variants for C16orf58 Gene

Sequence variations from dbSNP and Humsavar for C16orf58 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
VAR_036485 A breast cancer sample
rs387906682 Pathogenic 31,489,034(+) TGCCG(C/G)GCGTT intron-variant, downstream-variant-500B, reference, missense
rs61742739 Pathogenic 31,490,477(+) GGTCA(A/G)CCTCA nc-transcript-variant, reference, missense, utr-variant-3-prime
rs61741237 Likely benign 31,490,401(+) CCCTT(A/G)CCCAG nc-transcript-variant, reference, missense, utr-variant-3-prime
rs114517938 Uncertain significance 31,490,598(+) CTGCG(A/C/G)TGCTC nc-transcript-variant, downstream-variant-500B, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for C16orf58 Gene

Variant ID Type Subtype PubMed ID
esv3570465 CNV gain 25503493
nsv1060240 CNV gain 25217958
nsv482193 CNV gain 20164927
nsv833194 CNV loss 17160897

Variation tolerance for C16orf58 Gene

Residual Variation Intolerance Score: 58.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.28; 40.80% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C16orf58 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C16orf58

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C16orf58 Gene

Disorders for C16orf58 Gene

MalaCards: The human disease database

(3) MalaCards diseases for C16orf58 Gene - From: DISEASES

Disorder Aliases PubMed IDs
acute cystitis
  • urinary tract infection
ureteral disease
  • ureteral disorders
bladder disease
  • urinary bladder disease
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for C16orf58

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C16orf58
genes like me logo Genes that share disorders with C16orf58: view

No data available for UniProtKB/Swiss-Prot and Genatlas for C16orf58 Gene

Publications for C16orf58 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  3. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 60
  4. An organelle-specific protein landscape identifies novel diseases and molecular mechanisms. (PMID: 27173435) Boldt K … UK10K Rare Diseases Group (Nature communications 2016) 3 60
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3 60

Products for C16orf58 Gene

Sources for C16orf58 Gene

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