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Aliases for C16orf52 Gene

Aliases for C16orf52 Gene

  • Chromosome 16 Open Reading Frame 52 2 3

External Ids for C16orf52 Gene

Previous GeneCards Identifiers for C16orf52 Gene

  • GC16P021928
  • GC16U900642
  • GC16P022021
  • GC16P020264

Summaries for C16orf52 Gene

GeneCards Summary for C16orf52 Gene

C16orf52 (Chromosome 16 Open Reading Frame 52) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C16orf52 Gene

Genomics for C16orf52 Gene

Regulatory Elements for C16orf52 Gene

Genomic Location for C16orf52 Gene

22,007,638 bp from pter
22,087,534 bp from pter
79,897 bases
Plus strand

Genomic View for C16orf52 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C16orf52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C16orf52 Gene

Proteins for C16orf52 Gene

  • Protein details for C16orf52 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein C16orf52
    Protein Accession:
    Secondary Accessions:
    • H3BNM6

    Protein attributes for C16orf52 Gene

    167 amino acids
    Molecular mass:
    18250 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C16orf52 Gene


neXtProt entry for C16orf52 Gene

Proteomics data for C16orf52 Gene at MOPED

Post-translational modifications for C16orf52 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C16orf52 Gene

No data available for DME Specific Peptides for C16orf52 Gene

Domains & Families for C16orf52 Gene

Protein Domains for C16orf52 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C16orf52: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C16orf52 Gene

Function for C16orf52 Gene

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C16orf52

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targets and HOMER Transcription for C16orf52 Gene

Localization for C16orf52 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C16orf52 Gene

Pathways & Interactions for C16orf52 Gene

SuperPathways for C16orf52 Gene

No Data Available

Interacting Proteins for C16orf52 Gene

Gene Ontology (GO) - Biological Process for C16orf52 Gene


No data available for Pathways by source and SIGNOR curated interactions for C16orf52 Gene

Drugs & Compounds for C16orf52 Gene

No Compound Related Data Available

Transcripts for C16orf52 Gene

mRNA/cDNA for C16orf52 Gene

(2) REFSEQ mRNAs :
(9) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C16orf52 Gene

Chromosome 16 open reading frame 52:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C16orf52

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C16orf52 Gene

No ASD Table

Relevant External Links for C16orf52 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for C16orf52 Gene

mRNA expression in normal human tissues for C16orf52 Gene

SOURCE GeneReport for Unigene cluster for C16orf52 Gene Hs.498890

genes like me logo Genes that share expression patterns with C16orf52: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for C16orf52 Gene

Orthologs for C16orf52 Gene

This gene was present in the common ancestor of animals.

Orthologs for C16orf52 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia C25H16orf52 35
  • 98 (n)
  • 100 (a)
C16orf52 36
  • 99 (a)
(Canis familiaris)
Mammalia C6H16orf52 35
  • 98.2 (n)
  • 100 (a)
C16orf52 36
  • 100 (a)
(Mus musculus)
Mammalia BC030336 35
  • 97.01 (n)
  • 100 (a)
BC030336 16
BC030336 36
  • 100 (a)
(Pan troglodytes)
Mammalia C16H16orf52 35
  • 100 (n)
  • 100 (a)
(Rattus norvegicus)
Mammalia LOC102547219 35
  • 96.18 (n)
  • 100 (a)
(Monodelphis domestica)
Mammalia C16orf52 36
  • 98 (a)
(Ornithorhynchus anatinus)
Mammalia C16orf52 36
  • 100 (a)
(Gallus gallus)
Aves C14H16ORF52 35
  • 90.02 (n)
  • 99.4 (a)
C16orf52 36
  • 99 (a)
(Anolis carolinensis)
Reptilia C16orf52 36
  • 98 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia c16orf52 35
  • 86.83 (n)
  • 100 (a)
(Danio rerio)
Actinopterygii LOC100535551 35
  • 82.04 (n)
  • 100 (a)
C12H16orf52 36
  • 90 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP012207 35
  • 54.14 (n)
  • 51.52 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG14182 35
  • 55.42 (n)
  • 51.81 (a)
CG14182 36
  • 51 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.6797 36
  • 48 (a)
Species with no ortholog for C16orf52:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C16orf52 Gene

Gene Tree for C16orf52 (if available)
Gene Tree for C16orf52 (if available)

Paralogs for C16orf52 Gene Pseudogenes for C16orf52 Gene

genes like me logo Genes that share paralogs with C16orf52: view

No data available for Paralogs for C16orf52 Gene

Variants for C16orf52 Gene

Sequence variations from dbSNP and Humsavar for C16orf52 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs12121 -- 22,084,411(-) GAATC(A/C)TACCT utr-variant-3-prime
rs725407 -- 22,070,552(-) ATGCC(C/T)TCCTG intron-variant
rs725408 -- 22,070,404(-) TTTAT(C/T)TTTTC intron-variant
rs1017228 -- 22,052,396(+) cctta(C/T)acact intron-variant
rs1133574 -- 22,007,666(-) GGCCG(C/T)CAGCT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C16orf52 Gene

Variant ID Type Subtype PubMed ID
nsv428322 CNV Gain 18775914
nsv7280 OTHER Inversion 18451855
dgv3n1 OTHER Inversion 15895083
nsv511047 OTHER Inversion 20534489
dgv47n16 OTHER Inversion 17901297
nsv499139 OTHER Inversion 21111241
esv998989 OTHER Inversion 20482838
esv2714070 CNV Deletion 23290073
dgv48n16 CNV Insertion 17901297
nsv1764 CNV Loss 18451855
nsv435668 CNV Deletion 17901297
nsv498860 CNV Loss 21111241
dgv2647n71 CNV Loss 21882294
nsv905598 CNV Gain 21882294
nsv519813 CNV Gain+Loss 19592680
esv2714071 CNV Deletion 23290073
esv2672814 CNV Deletion 23128226
nsv469628 CNV Complex 16826518
esv2714072 CNV Deletion 23290073

Variation tolerance for C16orf52 Gene

Gene Damage Index Score: 6.38; 77.00% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C16orf52 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C16orf52 Gene

Disorders for C16orf52 Gene

Relevant External Links for C16orf52

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with C16orf52: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C16orf52 Gene

Publications for C16orf52 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 67
  2. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 67
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 67
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 67

Products for C16orf52 Gene

Sources for C16orf52 Gene

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