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Aliases for C16orf52 Gene

Aliases for C16orf52 Gene

  • Chromosome 16 Open Reading Frame 52 2 3

External Ids for C16orf52 Gene

Summaries for C16orf52 Gene

GeneCards Summary for C16orf52 Gene

C16orf52 (Chromosome 16 Open Reading Frame 52) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C16orf52 Gene

Genomics for C16orf52 Gene

Genomic Location for C16orf52 Gene

Start:
22,007,638 bp from pter
End:
22,087,535 bp from pter
Size:
79,898 bases
Orientation:
Plus strand

Genomic View for C16orf52 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C16orf52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C16orf52 Gene

Regulatory Elements for C16orf52 Gene

Proteins for C16orf52 Gene

  • Protein details for C16orf52 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NHV5-CP052_HUMAN
    Recommended name:
    Uncharacterized protein C16orf52
    Protein Accession:
    Q8NHV5
    Secondary Accessions:
    • H3BNM6

    Protein attributes for C16orf52 Gene

    Size:
    167 amino acids
    Molecular mass:
    18250 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C16orf52 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C16orf52 Gene

Proteomics data for C16orf52 Gene at MOPED

Post-translational modifications for C16orf52 Gene

No Post-translational modifications

Other Protein References for C16orf52 Gene

No data available for DME Specific Peptides for C16orf52 Gene

Domains for C16orf52 Gene

Protein Domains for C16orf52 Gene

ProtoNet:
genes like me logo Genes that share domains with C16orf52: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C16orf52 Gene

Function for C16orf52 Gene

miRNA for C16orf52 Gene

miRTarBase miRNAs that target C16orf52

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C16orf52 Gene

Localization for C16orf52 Gene

Gene Ontology (GO) - Cellular Components for C16orf52 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane --
genes like me logo Genes that share ontologies with C16orf52: view

Pathways for C16orf52 Gene

SuperPathways for C16orf52 Gene

No Data Available

Interacting Proteins for C16orf52 Gene

Gene Ontology (GO) - Biological Process for C16orf52 Gene

None

No data available for Pathways by source for C16orf52 Gene

Transcripts for C16orf52 Gene

mRNA/cDNA for C16orf52 Gene

(2) REFSEQ mRNAs :
(9) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C16orf52 Gene

Chromosome 16 open reading frame 52:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C16orf52 Gene

No ASD Table

Relevant External Links for C16orf52 Gene

GeneLoc Exon Structure for
C16orf52
ECgene alternative splicing isoforms for
C16orf52

Expression for C16orf52 Gene

mRNA expression in normal human tissues for C16orf52 Gene

SOURCE GeneReport for Unigene cluster for C16orf52 Gene Hs.498890

genes like me logo Genes that share expressions with C16orf52: view

Orthologs for C16orf52 Gene

This gene was present in the common ancestor of animals.

Orthologs for C16orf52 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C16H16orf52 36
  • 100 (n)
  • 100 (a)
cow
(Bos Taurus)
Mammalia C16orf52 37
  • 99 (a)
OneToOne
C25H16orf52 36
  • 98 (n)
  • 100 (a)
dog
(Canis familiaris)
Mammalia C16orf52 37
  • 100 (a)
OneToOne
C6H16orf52 36
  • 98.2 (n)
  • 100 (a)
mouse
(Mus musculus)
Mammalia BC030336 36
  • 97.01 (n)
  • 100 (a)
BC030336 16
BC030336 37
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C16orf52 37
  • 98 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C16orf52 37
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC102547219 36
  • 96.18 (n)
  • 100 (a)
chicken
(Gallus gallus)
Aves C14H16ORF52 36
  • 90.02 (n)
  • 99.4 (a)
C16orf52 37
  • 99 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C16orf52 37
  • 98 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c16orf52 36
  • 86.83 (n)
  • 100 (a)
zebrafish
(Danio rerio)
Actinopterygii C12H16orf52 37
  • 90 (a)
OneToOne
LOC100535551 36
  • 82.04 (n)
  • 100 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP012207 36
  • 54.14 (n)
  • 51.52 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG14182 36
  • 55.42 (n)
  • 51.81 (a)
CG14182 37
  • 51 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.6797 37
  • 48 (a)
OneToOne
Species with no ortholog for C16orf52:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C16orf52 Gene

ENSEMBL:
Gene Tree for C16orf52 (if available)
TreeFam:
Gene Tree for C16orf52 (if available)

Paralogs for C16orf52 Gene

Pseudogenes.org Pseudogenes for C16orf52 Gene

genes like me logo Genes that share paralogs with C16orf52: view

No data available for Paralogs for C16orf52 Gene

Variants for C16orf52 Gene

Sequence variations from dbSNP and Humsavar for C16orf52 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs12121 -- 22,084,411(-) GAATC(A/C)TACCT utr-variant-3-prime, intron-variant
rs725406 -- 22,070,679(-) TAGCA(A/C)ACTGG intron-variant
rs725407 -- 22,070,552(-) ATGCC(C/T)TCCTG intron-variant
rs725408 -- 22,070,404(-) TTTAT(C/T)TTTTC intron-variant
rs1017228 -- 22,052,396(+) cctta(C/T)acact intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C16orf52 Gene

Variant ID Type Subtype PubMed ID
nsv428322 CNV Gain 18775914
nsv7280 OTHER Inversion 18451855
dgv3n1 OTHER Inversion 15895083
nsv511047 OTHER Inversion 20534489
dgv47n16 OTHER Inversion 17901297
nsv499139 OTHER Inversion 21111241
esv998989 OTHER Inversion 20482838
esv2714070 CNV Deletion 23290073
dgv48n16 CNV Insertion 17901297
nsv1764 CNV Loss 18451855
nsv435668 CNV Deletion 17901297
nsv498860 CNV Loss 21111241
dgv2647n71 CNV Loss 21882294
nsv905598 CNV Gain 21882294
nsv519813 CNV Gain+Loss 19592680
esv2714071 CNV Deletion 23290073
esv2672814 CNV Deletion 23128226
nsv469628 CNV Complex 16826518
esv2714072 CNV Deletion 23290073

Relevant External Links for C16orf52 Gene

HapMap Linkage Disequilibrium report
C16orf52

Disorders for C16orf52 Gene

No disorders were found for C16orf52 Gene.

No data available for UniProtKB/Swiss-Prot for C16orf52 Gene

Publications for C16orf52 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 3 4
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for C16orf52 Gene

Sources for C16orf52 Gene

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