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Aliases for C16orf47 Gene

Aliases for C16orf47 Gene

  • Chromosome 16 Open Reading Frame 47 2 3

External Ids for C16orf47 Gene

Previous GeneCards Identifiers for C16orf47 Gene

  • GC16M071719
  • GC16U900886
  • GC16M058929

Summaries for C16orf47 Gene

GeneCards Summary for C16orf47 Gene

C16orf47 (Chromosome 16 Open Reading Frame 47) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C16orf47 Gene

Genomics for C16orf47 Gene

Genomic Location for C16orf47 Gene

73,126,637 bp from pter
73,144,447 bp from pter
17,811 bases
Minus strand

Genomic View for C16orf47 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C16orf47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C16orf47 Gene

No data available for Regulatory Elements for C16orf47 Gene

Proteins for C16orf47 Gene

  • Protein details for C16orf47 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative uncharacterized protein C16orf47
    Protein Accession:
    Secondary Accessions:

    Protein attributes for C16orf47 Gene

    133 amino acids
    Molecular mass:
    14599 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C16orf47 Gene

Proteomics data for C16orf47 Gene at MOPED

Post-translational modifications for C16orf47 Gene

No Post-translational modifications

Other Protein References for C16orf47 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for C16orf47 Gene

Domains for C16orf47 Gene

Protein Domains for C16orf47 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C16orf47: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C16orf47 Gene

Function for C16orf47 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C16orf47 Gene

Localization for C16orf47 Gene

Subcellular locations from

Jensen Localization Image for C16orf47 Gene COMPARTMENTS Subcellular localization image for C16orf47 gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C16orf47 Gene

Pathways for C16orf47 Gene

SuperPathways for C16orf47 Gene

No Data Available

Interacting Proteins for C16orf47 Gene

Gene Ontology (GO) - Biological Process for C16orf47 Gene


No data available for Pathways by source for C16orf47 Gene

Transcripts for C16orf47 Gene

mRNA/cDNA for C16orf47 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C16orf47 Gene

Chromosome 16 open reading frame 47:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C16orf47 Gene

No ASD Table

Relevant External Links for C16orf47 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for C16orf47 Gene

mRNA expression in normal human tissues for C16orf47 Gene

mRNA differential expression in normal tissues according to GTEx for C16orf47 Gene

This gene is overexpressed in Brain - Hypothalamus (5.0), Artery - Tibial (4.2), and Liver (4.2).

SOURCE GeneReport for Unigene cluster for C16orf47 Gene Hs.371893

genes like me logo Genes that share expressions with C16orf47: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for C16orf47 Gene

Orthologs for C16orf47 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C16orf47 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia LOC100615731 35
  • 98.1 (n)
  • 97.54 (a)
C16orf47 36
  • 98 (a)
Species with no ortholog for C16orf47:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C16orf47 Gene

Gene Tree for C16orf47 (if available)
Gene Tree for C16orf47 (if available)

Paralogs for C16orf47 Gene

No data available for Paralogs for C16orf47 Gene

Variants for C16orf47 Gene

Sequence variations from dbSNP and Humsavar for C16orf47 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs4261572 -- 73,142,220(+) CTTGT(C/G)CCTCT intron-variant
rs4268781 -- 73,134,412(+) tatca(C/T)ggctc intron-variant
rs4442842 -- 73,126,678(+) CTCCT(A/G)GTAAA utr-variant-3-prime
rs4442843 -- 73,134,038(+) CTACG(C/T)CTATA intron-variant
rs4454998 -- 73,134,143(+) caagg(C/T)ctcac intron-variant

Relevant External Links for C16orf47 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for C16orf47 Gene

Disorders for C16orf47 Gene

Relevant External Links for C16orf47

Genetic Association Database (GAD)

No disorders were found for C16orf47 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for C16orf47 Gene

Publications for C16orf47 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis. (PMID: 19010793) Baranzini S.E. … Oksenberg J.R. (Hum. Mol. Genet. 2009) 3 48
  3. Quantitative Lys-I/-Gly-Gly (diGly) proteomics coupled with inducible RNAi reveals ubiquitin-mediated proteolysis of DNA damage-inducible transcript 4 (DDIT4) by the E3 ligase HUWE1. (PMID: 25147182) Thompson J.W. … Luchansky S.J. (J. Biol. Chem. 2014) 3

Products for C16orf47 Gene

Sources for C16orf47 Gene

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