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Aliases for C16orf47 Gene

Aliases for C16orf47 Gene

  • Chromosome 16 Open Reading Frame 47 2 3

External Ids for C16orf47 Gene

Previous GeneCards Identifiers for C16orf47 Gene

  • GC16M071719
  • GC16U900886
  • GC16M058929

Summaries for C16orf47 Gene

GeneCards Summary for C16orf47 Gene

C16orf47 (Chromosome 16 Open Reading Frame 47) is a Protein Coding gene.

Additional gene information for C16orf47 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C16orf47 Gene

Genomics for C16orf47 Gene

Regulatory Elements for C16orf47 Gene

Enhancers for C16orf47 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H073045 2.1 FANTOM5 Ensembl ENCODE dbSUPER 11.1 +85.5 85457 26 MLX FEZF1 DMAP1 YBX1 YY1 ZNF143 ZNF548 SP3 SSRP1 ZNF610 DHX38 C16orf47 ENSG00000259209 ZFHX3 ENSG00000271009 TXNL4B PIR53148
GH16H073082 1.3 Ensembl ENCODE dbSUPER 12.1 +61.7 61706 1 TBP RAD21 BRCA1 RFX5 GTF3C2 POLR3A ZSCAN5C RCOR1 FOS CEBPB DHX38 C16orf47 ZFHX3 HCCAT5 GC16P073065
GH16H073095 0.9 dbSUPER 11.9 +48.0 47985 1 NFIB INSM2 FEZF1 BRCA1 ZNF2 ZNF366 SCRT2 FOS OVOL3 TSHZ1 C16orf47 ZFHX3 HCCAT5 ENSG00000284675
GH16H073113 0.8 Ensembl ENCODE 12.1 +30.8 30847 0 ZNF366 HLF MAX USF2 CEBPB TCF7L2 C16orf47 ENSG00000284675 HCCAT5
GH16H073201 0.8 ENCODE 11.8 -59.7 -59733 5 PKNOX1 FEZF1 RAD21 RARA ZNF302 ZNF366 CEBPB ZNF488 ZNF843 BCL6B C16orf47 ZFHX3 ENSG00000261227
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C16orf47 on UCSC Golden Path with GeneCards custom track

Promoters for C16orf47 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000087823 346 1000 ZBTB48 ZSCAN5C PRDM10 PRDM1 TRIM28

Genomic Location for C16orf47 Gene

Chromosome:
16
Start:
73,126,638 bp from pter
End:
73,144,447 bp from pter
Size:
17,810 bases
Orientation:
Minus strand

Genomic View for C16orf47 Gene

Genes around C16orf47 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C16orf47 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C16orf47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C16orf47 Gene

Proteins for C16orf47 Gene

  • Protein details for C16orf47 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZP98-CP047_HUMAN
    Recommended name:
    Putative uncharacterized protein C16orf47
    Protein Accession:
    Q6ZP98

    Protein attributes for C16orf47 Gene

    Size:
    133 amino acids
    Molecular mass:
    14599 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C16orf47 Gene

Post-translational modifications for C16orf47 Gene

No Post-translational modifications

Other Protein References for C16orf47 Gene

No data available for DME Specific Peptides for C16orf47 Gene

Domains & Families for C16orf47 Gene

Protein Domains for C16orf47 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C16orf47: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C16orf47 Gene

Function for C16orf47 Gene

Phenotypes From GWAS Catalog for C16orf47 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for C16orf47
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C16orf47 Gene

Localization for C16orf47 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C16orf47 gene
Compartment Confidence
nucleus 2
cytosol 2
extracellular 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C16orf47 Gene

Pathways & Interactions for C16orf47 Gene

SuperPathways for C16orf47 Gene

No Data Available

Interacting Proteins for C16orf47 Gene

Gene Ontology (GO) - Biological Process for C16orf47 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C16orf47 Gene

Drugs & Compounds for C16orf47 Gene

No Compound Related Data Available

Transcripts for C16orf47 Gene

mRNA/cDNA for C16orf47 Gene

(3) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:

Unigene Clusters for C16orf47 Gene

Chromosome 16 open reading frame 47:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for C16orf47
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for C16orf47 Gene

No ASD Table

Relevant External Links for C16orf47 Gene

GeneLoc Exon Structure for
C16orf47
ECgene alternative splicing isoforms for
C16orf47

Expression for C16orf47 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C16orf47 Gene

mRNA differential expression in normal tissues according to GTEx for C16orf47 Gene

This gene is overexpressed in Brain - Hypothalamus (x5.0), Artery - Tibial (x4.2), and Liver (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of C16orf47 Gene:

C16orf47

SOURCE GeneReport for Unigene cluster for C16orf47 Gene:

Hs.371893
genes like me logo Genes that share expression patterns with C16orf47: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C16orf47 Gene

Orthologs for C16orf47 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C16orf47 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC100615731 33
  • 98.1 (n)
Species where no ortholog for C16orf47 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

No data available for Evolution for C16orf47 Gene

Paralogs for C16orf47 Gene

No data available for Paralogs for C16orf47 Gene

Variants for C16orf47 Gene

Sequence variations from dbSNP and Humsavar for C16orf47 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000001239 -- 73,488,245(+) GGGCT(A/G)GCTGA intron-variant
rs1000003746 -- 73,417,005(+) CCTTA(A/C)CCAAG intron-variant
rs1000004466 -- 73,596,429(+) CTGTC(A/T)CTCTC intron-variant
rs1000016393 -- 73,429,649(+) ATTTT(C/T)TTAAG intron-variant
rs1000018870 -- 73,519,881(+) TTTCA(G/T)TTTTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C16orf47 Gene

Variant ID Type Subtype PubMed ID
esv3571487 CNV gain 25503493
nsv1870 CNV insertion 18451855
nsv7285 OTHER inversion 18451855

Variation tolerance for C16orf47 Gene

Gene Damage Index Score: 0.95; 19.64% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C16orf47 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C16orf47

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C16orf47 Gene

Disorders for C16orf47 Gene

Relevant External Links for C16orf47

Genetic Association Database (GAD)
C16orf47
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C16orf47

No disorders were found for C16orf47 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C16orf47 Gene

Publications for C16orf47 Gene

  1. Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis. (PMID: 19010793) Baranzini SE … Oksenberg JR (Human molecular genetics 2009) 3 45 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  3. Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans. (PMID: 23400010) Del-Aguila JL … Boerwinkle E (The pharmacogenomics journal 2014) 3 60
  4. A genome-wide association study for reading and language abilities in two population cohorts. (PMID: 23738518) Luciano M … Bates TC (Genes, brain, and behavior 2013) 3 60
  5. Genome-wide association study of major depressive disorder: new results, meta-analysis, and lessons learned. (PMID: 21042317) Wray NR … Sullivan PF (Molecular psychiatry 2012) 3 60

Products for C16orf47 Gene

Sources for C16orf47 Gene

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