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Aliases for C16orf13 Gene

Aliases for C16orf13 Gene

  • Chromosome 16 Open Reading Frame 13 2 3
  • UPF0585 Protein C16orf13 3
  • JFP2 3

External Ids for C16orf13 Gene

Summaries for C16orf13 Gene

GeneCards Summary for C16orf13 Gene

C16orf13 (Chromosome 16 Open Reading Frame 13) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C16orf13 Gene

Genomics for C16orf13 Gene

Genomic Location for C16orf13 Gene

Start:
634,427 bp from pter
End:
636,366 bp from pter
Size:
1,940 bases
Orientation:
Minus strand

Genomic View for C16orf13 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C16orf13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C16orf13 Gene

Proteins for C16orf13 Gene

  • Protein details for C16orf13 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96S19-CP013_HUMAN
    Recommended name:
    UPF0585 protein C16orf13
    Protein Accession:
    Q96S19
    Secondary Accessions:
    • A8MTR1
    • A8MWJ8
    • A8MZA1
    • B4DG95
    • B4DIJ3
    • D6REA6
    • F6TF62
    • F6VM53
    • Q96IW1
    • Q96MD6

    Protein attributes for C16orf13 Gene

    Size:
    204 amino acids
    Molecular mass:
    22578 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAK61238.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=EAW85785.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for C16orf13 Gene

neXtProt entry for C16orf13 Gene

Proteomics data for C16orf13 Gene at MOPED

Post-translational modifications for C16orf13 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for C16orf13 Gene

Domains for C16orf13 Gene

Protein Domains for C16orf13 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

CP013_HUMAN
Family:
  • Belongs to the UPF0585 family.:
    • Q96S19
genes like me logo Genes that share domains with C16orf13: view

No data available for Gene Families for C16orf13 Gene

Function for C16orf13 Gene

genes like me logo Genes that share phenotypes with C16orf13: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C16orf13 Gene

Localization for C16orf13 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C16orf13 Gene COMPARTMENTS Subcellular localization image for C16orf13 gene
Compartment Confidence
extracellular 2
cytosol 1
mitochondrion 1
nucleus 1
plasma membrane 1

No data available for Gene Ontology (GO) - Cellular Components for C16orf13 Gene

Pathways for C16orf13 Gene

SuperPathways for C16orf13 Gene

No Data Available

Interacting Proteins for C16orf13 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000440765%0d%0a9606.ENSP00000267814%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000440765 for C16orf13 Gene via STRING

Gene Ontology (GO) - Biological Process for C16orf13 Gene

None

No data available for Pathways by source for C16orf13 Gene

Transcripts for C16orf13 Gene

Unigene Clusters for C16orf13 Gene

Chromosome 16 open reading frame 13:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C16orf13 Gene

ExUns: 1a · 1b · 1c · 1d · 1e · 1f · 1g ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b · 5c ^ 6a · 6b · 6c ^ 7a · 7b · 7c ^ 8a · 8b · 8c · 8d
SP1: - - - -
SP2: - - -
SP3: - - - - - -
SP4: - - - - -
SP5: - - - - -
SP6: - - - -
SP7: - - - - -
SP8: - - - - - - - -
SP9: - - - - - - -
SP10: - - - - - - -
SP11: - - - - -
SP12: - - - - - - - - -
SP13: -
SP14: - - - - - - - - - - - - -
SP15: -
SP16:
SP17: - - - - -

Relevant External Links for C16orf13 Gene

GeneLoc Exon Structure for
C16orf13
ECgene alternative splicing isoforms for
C16orf13

Expression for C16orf13 Gene

mRNA expression in normal human tissues for C16orf13 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C16orf13 Gene

SOURCE GeneReport for Unigene cluster for C16orf13 Gene Hs.239500

genes like me logo Genes that share expressions with C16orf13: view

Orthologs for C16orf13 Gene

This gene was present in the common ancestor of animals.

Orthologs for C16orf13 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C16H16orf13 36
  • 97.88 (n)
  • 98.04 (a)
C16orf13 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C25H16orf13 36
  • 87.42 (n)
  • 87.25 (a)
C25H16ORF13 37
  • 61 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C16orf13 37
  • 50 (a)
OneToOne
C6H16orf13 36
  • 88.56 (n)
  • 90.69 (a)
mouse
(Mus musculus)
Mammalia 0610011F06Rik 36
  • 85.71 (n)
  • 86.7 (a)
0610011F06Rik 16
0610011F06Rik 37
  • 60 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C16orf13 37
  • 44 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1307155 36
  • 84.92 (n)
  • 86.9 (a)
lizard
(Anolis carolinensis)
Reptilia C16orf13 37
  • 44 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c16orf13 36
  • 61.88 (n)
  • 57.92 (a)
zebrafish
(Danio rerio)
Actinopterygii C3H16orf13 37
  • 34 (a)
OneToOne
zgc:56719 36
  • 58.78 (n)
  • 57.64 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP009967 36
  • 50.58 (n)
  • 47.76 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG18661 36
  • 51.68 (n)
  • 43.43 (a)
CG18661 37
  • 25 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea Y26E6A.3 36
  • 48 (n)
  • 45 (a)
Y26E6A.3 37
  • 30 (a)
OneToOne
Species with no ortholog for C16orf13:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for C16orf13 Gene

ENSEMBL:
Gene Tree for C16orf13 (if available)
TreeFam:
Gene Tree for C16orf13 (if available)

Paralogs for C16orf13 Gene

Selected SIMAP similar genes for C16orf13 Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with C16orf13: view

No data available for Paralogs for C16orf13 Gene

Variants for C16orf13 Gene

Sequence variations from dbSNP and Humsavar for C16orf13 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
VAR_064368 -

Structural Variations from Database of Genomic Variants (DGV) for C16orf13 Gene

Variant ID Type Subtype PubMed ID
esv2422427 CNV Duplication 17116639
nsv904707 CNV Loss 21882294
nsv526903 CNV Loss 19592680
dgv2475n71 CNV Loss 21882294
dgv2479n71 CNV Loss 21882294
nsv833114 CNV Gain+Loss 17160897
nsv471063 CNV Loss 18288195
dgv2484n71 CNV Loss 21882294
dgv2485n71 CNV Loss 21882294
nsv904759 CNV Loss 21882294
dgv334n27 CNV Loss 19166990
nsv904760 CNV Loss 21882294
dgv2487n71 CNV Loss 21882294
nsv516590 CNV Loss 19592680
dgv2488n71 CNV Loss 21882294
nsv904779 CNV Loss 21882294
nsv904781 CNV Gain 21882294
nsv471065 CNV Gain 18288195
dgv2489n71 CNV Loss 21882294
nsv904785 CNV Gain+Loss 21882294
dgv2490n71 CNV Loss 21882294
esv2750219 CNV Deletion 23290073

Relevant External Links for C16orf13 Gene

HapMap Linkage Disequilibrium report
C16orf13

Disorders for C16orf13 Gene

No disorders were found for C16orf13 Gene.

No data available for UniProtKB/Swiss-Prot for C16orf13 Gene

Publications for C16orf13 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Sequence, structure and pathology of the fully annotated terminal 2 Mb of the short arm of human chromosome 16. (PMID: 11157797) Daniels R.J. … Higgs D.R. (Hum. Mol. Genet. 2001) 3 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y. … Sugano S. (Genome Res. 2004) 3
  5. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3

Products for C16orf13 Gene

Sources for C16orf13 Gene

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