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Aliases for C15orf57 Gene

Aliases for C15orf57 Gene

  • Chromosome 15 Open Reading Frame 57 2 3
  • Coiled-Coil Domain Containing 32 2 3
  • CCDC32 3 4
  • Uncharacterized Protein C15orf57 3
  • Protein CCDC32 4

External Ids for C15orf57 Gene

Previous Symbols for C15orf57 Gene

  • CCDC32

Summaries for C15orf57 Gene

GeneCards Summary for C15orf57 Gene

C15orf57 (Chromosome 15 Open Reading Frame 57) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C15orf57 Gene

Genomics for C15orf57 Gene

Genomic Location for C15orf57 Gene

Start:
40,528,683 bp from pter
End:
40,565,057 bp from pter
Size:
36,375 bases
Orientation:
Minus strand

Genomic View for C15orf57 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C15orf57 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C15orf57 Gene

Regulatory Elements for C15orf57 Gene

Proteins for C15orf57 Gene

  • Protein details for C15orf57 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BV29-CO057_HUMAN
    Recommended name:
    Uncharacterized protein C15orf57
    Protein Accession:
    Q9BV29
    Secondary Accessions:
    • A8KAL4
    • Q86TC4
    • Q8N788
    • Q8NAR7

    Protein attributes for C15orf57 Gene

    Size:
    185 amino acids
    Molecular mass:
    20656 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAD89911.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for C15orf57 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C15orf57 Gene

Proteomics data for C15orf57 Gene at MOPED

Post-translational modifications for C15orf57 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys119

No data available for DME Specific Peptides for C15orf57 Gene

Domains for C15orf57 Gene

Protein Domains for C15orf57 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C15orf57 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C15orf57: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C15orf57 Gene

Function for C15orf57 Gene

miRNA for C15orf57 Gene

miRTarBase miRNAs that target C15orf57

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C15orf57 Gene

Localization for C15orf57 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C15orf57 Gene COMPARTMENTS Subcellular localization image for C15orf57 gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C15orf57 Gene

Pathways for C15orf57 Gene

SuperPathways for C15orf57 Gene

No Data Available

Interacting Proteins for C15orf57 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000452773%0d%0a9606.ENSP00000350249%0d%0a
Selected Interacting proteins: ENSP00000452773 for C15orf57 Gene via STRING

Symbol External ID(s) Details
POT1

Gene Ontology (GO) - Biological Process for C15orf57 Gene

None

No data available for Pathways by source for C15orf57 Gene

Transcripts for C15orf57 Gene

Unigene Clusters for C15orf57 Gene

Chromosome 15 open reading frame 57:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C15orf57 Gene

ExUns: 1a · 1b · 1c · 1d · 1e · 1f · 1g · 1h ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b · 5c ^ 6 ^ 7a · 7b · 7c ^ 8
SP1: - - - - -
SP2: - - - -
SP3: - - - - - - - - -
SP4: - - - - -
SP5: - - - - - - - -
SP6: - - - - - - - - - - - -
SP7: - - - - - - - -
SP8: - - -
SP9: - - -
SP10: - -
SP11: - -
SP12: - - - - - - - -

Relevant External Links for C15orf57 Gene

GeneLoc Exon Structure for
C15orf57
ECgene alternative splicing isoforms for
C15orf57

Expression for C15orf57 Gene

mRNA expression in normal human tissues for C15orf57 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C15orf57 Gene

SOURCE GeneReport for Unigene cluster for C15orf57 Gene Hs.654661

genes like me logo Genes that share expressions with C15orf57: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C15orf57 Gene

Orthologs for C15orf57 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C15orf57 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C15H15orf57 35
  • 99.83 (n)
  • 100 (a)
C15orf57 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C10H15orf57 35
  • 90.32 (n)
  • 87.15 (a)
CCDC32 36
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C15orf57 36
  • 90 (a)
OneToOne
C30H15orf57 35
  • 91.62 (n)
  • 91.62 (a)
mouse
(Mus musculus)
Mammalia Ccdc32 35
  • 88.08 (n)
  • 86.03 (a)
Ccdc32 16
Ccdc32 36
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C15orf57 36
  • 71 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ccdc32 35
  • 87.34 (n)
  • 84.92 (a)
chicken
(Gallus gallus)
Aves C5H15ORF57 35
  • 73.75 (n)
  • 71.26 (a)
C5H15ORF57 36
  • 70 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C15orf57 36
  • 65 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c15orf57 35
  • 59.55 (n)
  • 53.37 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.2757 35
zebrafish
(Danio rerio)
Actinopterygii C17H15orf57 36
  • 45 (a)
OneToOne
LOC564862 35
  • 59.02 (n)
  • 50 (a)
Species with no ortholog for C15orf57:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C15orf57 Gene

ENSEMBL:
Gene Tree for C15orf57 (if available)
TreeFam:
Gene Tree for C15orf57 (if available)

Paralogs for C15orf57 Gene

No data available for Paralogs for C15orf57 Gene

Variants for C15orf57 Gene

Sequence variations from dbSNP and Humsavar for C15orf57 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs6582 -- 40,553,398(+) AGAGA(A/G)AGAAG utr-variant-3-prime, intron-variant
rs896795 -- 40,549,460(+) TCAGC(G/T)CCCCT intron-variant
rs896796 -- 40,549,487(+) TACCC(A/C)ACTCC intron-variant
rs896797 -- 40,549,583(+) CTCTA(C/T)TCCCC intron-variant
rs921624 -- 40,550,076(+) GATCT(C/T)GCCAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C15orf57 Gene

Variant ID Type Subtype PubMed ID
esv34145 CNV Loss 18971310
nsv832984 CNV Loss 17160897
dgv739e1 CNV Complex 17122850
esv2749601 CNV Deletion 23290073
esv2749602 CNV Deletion 23290073
nsv507777 CNV Insertion 20534489

Relevant External Links for C15orf57 Gene

HapMap Linkage Disequilibrium report
C15orf57

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C15orf57 Gene

Disorders for C15orf57 Gene

No disorders were found for C15orf57 Gene.

No data available for UniProtKB/Swiss-Prot for C15orf57 Gene

Publications for C15orf57 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y. … Sugano S. (Genome Res. 2004) 3
  4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  5. Identification of cellular factors binding to acetylated HIV-1 integrase. (PMID: 20016921) Allouch A. … Cereseto A. (Amino Acids 2011) 3

Products for C15orf57 Gene

Sources for C15orf57 Gene

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