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Aliases for C15orf56 Gene

Aliases for C15orf56 Gene

  • Chromosome 15 Open Reading Frame 56 2 3

External Ids for C15orf56 Gene

Previous GeneCards Identifiers for C15orf56 Gene

  • GC15M038332
  • GC15M040542
  • GC15M017385

Summaries for C15orf56 Gene

GeneCards Summary for C15orf56 Gene

C15orf56 (Chromosome 15 Open Reading Frame 56) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C15orf56 Gene

Genomics for C15orf56 Gene

Regulatory Elements for C15orf56 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for C15orf56 Gene

Start:
40,250,664 bp from pter
End:
40,252,969 bp from pter
Size:
2,306 bases
Orientation:
Minus strand

Genomic View for C15orf56 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C15orf56 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C15orf56 Gene

Proteins for C15orf56 Gene

  • Protein details for C15orf56 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N910-CO056_HUMAN
    Recommended name:
    Putative uncharacterized protein C15orf56
    Protein Accession:
    Q8N910
    Secondary Accessions:

    Protein attributes for C15orf56 Gene

    Size:
    161 amino acids
    Molecular mass:
    17040 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C15orf56 Gene

Proteomics data for C15orf56 Gene at MOPED

Post-translational modifications for C15orf56 Gene

No Post-translational modifications

Other Protein References for C15orf56 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C15orf56 Gene

Domains for C15orf56 Gene

Protein Domains for C15orf56 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C15orf56: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C15orf56 Gene

Function for C15orf56 Gene

Animal Model Products

CRISPR Products

miRNA for C15orf56 Gene

miRTarBase miRNAs that target C15orf56

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C15orf56 Gene

Localization for C15orf56 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C15orf56 Gene COMPARTMENTS Subcellular localization image for C15orf56 gene
Compartment Confidence
cytosol 2
mitochondrion 2
nucleus 2
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C15orf56 Gene

Pathways for C15orf56 Gene

SuperPathways for C15orf56 Gene

No Data Available

Interacting Proteins for C15orf56 Gene

Gene Ontology (GO) - Biological Process for C15orf56 Gene

None

No data available for Pathways by source for C15orf56 Gene

Transcripts for C15orf56 Gene

mRNA/cDNA for C15orf56 Gene

(3) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C15orf56 Gene

Chromosome 15 open reading frame 56:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C15orf56

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for C15orf56
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C15orf56 Gene

No ASD Table

Relevant External Links for C15orf56 Gene

GeneLoc Exon Structure for
C15orf56
ECgene alternative splicing isoforms for
C15orf56

Expression for C15orf56 Gene

SOURCE GeneReport for Unigene cluster for C15orf56 Gene Hs.631718

No Expression Related Data Available

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for C15orf56 Gene

Orthologs for C15orf56 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C15orf56 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C15H15orf56 35
  • 99.17 (n)
  • 97.52 (a)
C15orf56 36
  • 98 (a)
OneToOne
Species with no ortholog for C15orf56:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C15orf56 Gene

ENSEMBL:
Gene Tree for C15orf56 (if available)
TreeFam:
Gene Tree for C15orf56 (if available)

Paralogs for C15orf56 Gene

No data available for Paralogs for C15orf56 Gene

Variants for C15orf56 Gene

Sequence variations from dbSNP and Humsavar for C15orf56 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
VAR_061614 -
VAR_061615 -
VAR_061616 -

Structural Variations from Database of Genomic Variants (DGV) for C15orf56 Gene

Variant ID Type Subtype PubMed ID
nsv904095 CNV Loss 21882294
nsv471240 CNV Loss 18288195

Relevant External Links for C15orf56 Gene

HapMap Linkage Disequilibrium report
C15orf56

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C15orf56 Gene

Disorders for C15orf56 Gene

No disorders were found for C15orf56 Gene.

No data available for UniProtKB/Swiss-Prot for C15orf56 Gene

Publications for C15orf56 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C15orf56 Gene

Sources for C15orf56 Gene

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