Free for academic non-profit institutions. Other users need a Commercial license

Aliases for C15orf54 Gene

Aliases for C15orf54 Gene

  • Chromosome 15 Open Reading Frame 54 2 3

External Ids for C15orf54 Gene

Previous GeneCards Identifiers for C15orf54 Gene

  • GC15P037331
  • GC15P039542
  • GC15P016386

Summaries for C15orf54 Gene

GeneCards Summary for C15orf54 Gene

C15orf54 (Chromosome 15 Open Reading Frame 54) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C15orf54 Gene

Genomics for C15orf54 Gene

Regulatory Elements for C15orf54 Gene

Genomic Location for C15orf54 Gene

39,250,684 bp from pter
39,254,847 bp from pter
4,164 bases
Plus strand

Genomic View for C15orf54 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C15orf54 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C15orf54 Gene

Proteins for C15orf54 Gene

  • Protein details for C15orf54 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative uncharacterized protein C15orf54
    Protein Accession:
    Secondary Accessions:
    • B7ZVZ9

    Protein attributes for C15orf54 Gene

    183 amino acids
    Molecular mass:
    21040 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C15orf54 Gene

Proteomics data for C15orf54 Gene at MOPED

Post-translational modifications for C15orf54 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C15orf54 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C15orf54 Gene

Domains for C15orf54 Gene

Protein Domains for C15orf54 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C15orf54: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C15orf54 Gene

Function for C15orf54 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C15orf54

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C15orf54 Gene

Localization for C15orf54 Gene

Subcellular locations from

Jensen Localization Image for C15orf54 Gene COMPARTMENTS Subcellular localization image for C15orf54 gene
Compartment Confidence
cytosol 1
endoplasmic reticulum 1
golgi apparatus 1
mitochondrion 1
nucleus 1
peroxisome 1
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C15orf54 Gene

Pathways for C15orf54 Gene

SuperPathways for C15orf54 Gene

No Data Available

Interacting Proteins for C15orf54 Gene

Gene Ontology (GO) - Biological Process for C15orf54 Gene


No data available for Pathways by source for C15orf54 Gene

Transcripts for C15orf54 Gene

mRNA/cDNA for C15orf54 Gene

(5) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(2) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C15orf54 Gene

Chromosome 15 open reading frame 54:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C15orf54

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C15orf54 Gene

No ASD Table

Relevant External Links for C15orf54 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for C15orf54 Gene

mRNA expression in normal human tissues for C15orf54 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C15orf54 Gene

This gene is overexpressed in Whole Blood (5.3) and Minor Salivary Gland (5.2).

SOURCE GeneReport for Unigene cluster for C15orf54 Gene Hs.376109

genes like me logo Genes that share expressions with C15orf54: view

In Situ Assay Products

No data available for Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for C15orf54 Gene

Orthologs for C15orf54 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C15orf54 Gene

Organism Taxonomy Gene Similarity Type Details
(Canis familiaris)
Mammalia C30H15orf54 35
  • 85.42 (n)
  • 75 (a)
(Pan troglodytes)
Mammalia C15H15orf54 35
  • 97.81 (n)
  • 95.08 (a)
Species with no ortholog for C15orf54:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C15orf54 Gene

Gene Tree for C15orf54 (if available)
Gene Tree for C15orf54 (if available)

Paralogs for C15orf54 Gene

No data available for Paralogs for C15orf54 Gene

Variants for C15orf54 Gene

Sequence variations from dbSNP and Humsavar for C15orf54 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs156657 -- 39,249,331(+) attag(C/T)gctag upstream-variant-2KB
rs156783 -- 39,252,831(+) GTATT(G/T)CACTA utr-variant-3-prime
rs156784 -- 39,253,067(-) CTTTA(C/T)ATTTA utr-variant-3-prime
rs156785 -- 39,255,171(+) TTCTT(A/G)AATAG downstream-variant-500B
rs156789 -- 39,250,174(+) gtctg(C/T)ttctg upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C15orf54 Gene

Variant ID Type Subtype PubMed ID
dgv2358n71 CNV Loss 21882294

Relevant External Links for C15orf54 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C15orf54 Gene

Disorders for C15orf54 Gene

Relevant External Links for C15orf54

Genetic Association Database (GAD)

No disorders were found for C15orf54 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for C15orf54 Gene

Publications for C15orf54 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality. (PMID: 21348951) Parsa A. … Liggett S.B. (Clin Transl Sci 2011) 3
  3. Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study. (PMID: 23934736) Yu B. … Boerwinkle E. (Genet. Epidemiol. 2013) 3
  4. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PMID: 17903300) Fox C.S. … Atwood L.D. (BMC Med. Genet. 2007) 48
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for C15orf54 Gene

Sources for C15orf54 Gene

Back to Top