C15orf48 Gene
protein-coding GIFtS : 45
GCID: GC15 P045722
chromosome 15 open reading frame 48
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Aliasesfor C15orf48 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Chromosome 15 Open Reading Frame 48 1 2 NMES11 2 5 FOAP-112 Normal Mucosa Of Esophagus Specific 12 Normal Mucosa Of Esophagus-Specific Gene 1 Protein2 Protein FOAP-113
Export aliases for C15orf48 gene to outside databases Previous GC identifers: GC15P043511 GC15P022547
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Summariesfor C15orf48 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for C15orf48 : This gene was first identified in a study of human esophageal squamous cell carcinoma tissues. Levels of both the message and protein are reduced in carcinoma samples. In adult human tissues, this gene is expressed in the the esophagus, stomach, small intestine, colon and placenta. Alternatively spliced transcript variants that encode the same protein have been identified. (provided by RefSeq, Jun 2012)
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Genomic Viewsfor C15orf48 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000015.9 NC_018926.1 NT_010194.17 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the C15orf48 gene promoter: STAT1 Bach2 FOXD1 E47 NF-AT N-Myc NF-AT4 NF-AT2 NF-AT3 NF-AT1 Other transcription factors Search SABiosciences Chromatin IP Primers for C15orf48 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat C15orf48
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 15q21.1 Ensembl cytogenetic band: 15q21.1 HGNC cytogenetic band: 15q21.1 C15orf48 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 15 GeneLoc Exon Structure
GeneLoc location for GC15P045722: view genomic region
(about GC identifiers )
Start:
45,722,727 bp from pter
End:
45,740,959 bp from pter
Size:
18,233 bases
Orientation:
plus strand
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Proteinsfor C15orf48 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: NMES1_HUMAN, Q9C002 (See
protein sequence )Recommended Name: Normal mucosa of esophagus-specific gene 1 protein Size : 83 amino acids; 9617 Da
Subcellular location : NucleusExplore the universe of human proteins at neXtProt for C15orf48: NX_Q9C002 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9C002 C15orf48 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (2 alternative transcripts):
NP_115789.1 NP_922946.1 ENSEMBL proteins: ENSP00000379887 ENSP00000452967 ENSP00000341610 Human Recombinant Protein Products: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
C15orf48 for ontologies About GeneDecksing C15orf48 Antibody Products: Assay Products for C15orf48:
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Protein
Domains / Familiesfor C15orf48 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
C15orf48 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q9C002 ProtoNet protein and cluster: Q9C002
UniProtKB/Swiss-Prot: NMES1_HUMAN, Q9C002 Similarity : Belongs to the complex I NDUFA4 subunit family
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Functionfor C15orf48 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for C15orf48 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for C15orf48 (see all 3 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): C15orf48 (NM_032413 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for C15orf48 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat C15orf48
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C15orf48
1 GenomeRNAi human phenotype for C15orf48 :
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Pathways & Interactionsfor C15orf48 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for C15orf48 STRING Interaction
Network Preview (showing 2 interactants - click image to see more details)2 Interacting proteins for C15orf48 (ENSP00000341610 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table
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Drugs & Compoundsfor C15orf48 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for C15orf48 Search CenterWatch for drugs/clinical trials and news about C15orf48 / NMES1
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Transcriptsfor C15orf48 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
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Tagged/untagged cDNA clones from
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)About This Section REFSEQ mRNAs for C15orf48 gene (2 alternative transcripts): NM_032413.3 NM_197955.2 Unigene Cluster for C15orf48:
Chromosome 15 open reading frame 48 Hs.112242 [show with all ESTs ] Unigene Representative Sequence: NM_032413 4 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000396650 ENST00000558435 ENST00000344300 (uc001zvg.3 uc001zvh.3 )ENST00000558632 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for C15orf48 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for C15orf48 (see all 3 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): C15orf48 (NM_032413 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for C15orf48 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat C15orf48
Additional cDNA sequence: AB026707.1 AF228422.1 AK026298.1 BC021173.2
7 DOTS entries : DT.100755295 DT.91758671
DT.99958682 DT.100025292 DT.100755294 DT.40131427 DT.95112615 24/94 AceView cDNA sequences (see all 94 ):
BM504909 BM504582 BU949284 AW665458 AI207367 NM_197955 BQ631958 AK026298 BQ217789 AI625959 BM312626 BM838465 D20798 AA298786 BQ632294 CA309087 AI335741 AA298773 AW176424 BQ218935 BQ632588 AA758348 AA620995 AB026707 GeneLoc Exon Structure
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Expression for C15orf48 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section C15orf48 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: ACTGTGGCGG
About this image C15orf48 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See C15orf48 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for C15orf48 SOURCE GeneReport for Unigene cluster: Hs.112242 UniProtKB/Swiss-Prot: NMES1_HUMAN, Q9C002 Tissue specificity : Expressed mainly in stomach, placenta, small intestine and colon, as well as in normal mucosa ofesophagus. Down-regulated in esophageal squamous cell carcinoma SABiosciences Custom PCR Arrays for C15orf48 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for C15orf48Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat C15orf48 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat C15orf48 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat C15orf48 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C15orf48
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Orthologsfor C15orf48 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for C15orf48 gene from 4/11 species (see all 11 ) About this table
ENSEMBL Gene Tree for C15orf48 (if available)TreeFam Gene Tree for C15orf48 (if available)
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Paralogsfor C15orf48 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor C15orf48 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 15 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for C15orf48 (45722727 - 45740959 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for C15orf48: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing C15orf48
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Disorders
/ Diseasesfor C15orf48 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
C15orf48 for disorders About GeneDecksing
OMIM gene information: 608409
OMIM disorders : --6 diseases for C15orf48 : About MalaCards esophageal squamous cell carcinoma squamous cell carcinoma esophagitis carcinoma cervical carcinoma cervicitis Human Genome Epidemiology (HuGE) Navigator: C15orf48 (1 document)Export disorders for C15orf48 gene to outside databases
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Publicationsfor C15orf48 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for C15orf48 gene integrated from 9 sources : (articles sorted by number of sources associating them with C15orf48) Utopia : connect your pdf to the dynamic world of online information
A novel gene, NMES1, downregulated in human esophageal squamous cell carcinoma. (PubMed id 12209954) 1 , 2 , 3 Zhou J.... Liu Z. (2002) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) A regulatory dendritic cell signature correlates with the clinical efficacy of allergen-specific sublingual immunotherapy. (PubMed id 22464673) 1 Zimmer A....Moingeon P. (2012) Genetic variants in nuclear-encoded mitochondrial gen es influence AIDS progression. (PubMed id 20877624) 1 Hendrickson S.L....O'Brien S.J. (2010) Analysis of the methylation status of genes up-regulated by the demethylating agent, 5-aza-2'-deoxycytidine, in esophageal squamous cell carcinoma. (PubMed id 18636205) 1 Arai M....Yokosuka O. (2008) Discovery of novel methylation biomarkers in cervical carcinoma by global demethylation and microarray analysis. (PubMed id 16434596) 1 Sova P....Kiviat N. (2006) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002)
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External Searches for C15orf48 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing C15orf48 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing C15orf48 gene
(According to HUGE )
About This Section --
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Specialized Databases showing C15orf48 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for C15orf48 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for C15orf48 gene: Search GeneIP for patents involving C15orf48 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor C15orf48 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for C15orf48 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for C15orf48 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for C15orf48 OriGene Protein Over-expression Lysate for C15orf48 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for C15orf48 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for C15orf48 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for C15orf48 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for C15orf48 OriGene Custom Protein Services for C15orf48 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat C15orf48 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing C15orf48 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat C15orf48 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat C15orf48 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat C15orf48 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat C15orf48
C15orf48 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C15orf48
Search ThermoFisher Antibodies for C15orf48
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat C15orf48
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