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Aliases for C15orf39 Gene

Aliases for C15orf39 Gene

  • Chromosome 15 Open Reading Frame 39 2 3
  • Chromosome 15 Open Reading Frame 38~Name Same As HGNC:28782 2

External Ids for C15orf39 Gene

Previous GeneCards Identifiers for C15orf39 Gene

  • GC15P073279
  • GC15P075491
  • GC15P052290

Summaries for C15orf39 Gene

GeneCards Summary for C15orf39 Gene

C15orf39 (Chromosome 15 Open Reading Frame 39) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C15orf39 Gene

Genomics for C15orf39 Gene

Regulatory Elements for C15orf39 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for C15orf39 Gene

75,195,643 bp from pter
75,212,169 bp from pter
16,527 bases
Plus strand

Genomic View for C15orf39 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C15orf39 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C15orf39 Gene

Proteins for C15orf39 Gene

  • Protein details for C15orf39 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein C15orf39
    Protein Accession:
    Secondary Accessions:
    • B3KWI3
    • C9J888
    • Q71JB1
    • Q7L3S0
    • Q8N3F2
    • Q96FB6
    • Q9NTU5

    Protein attributes for C15orf39 Gene

    1047 amino acids
    Molecular mass:
    110673 Da
    Quaternary structure:
    No Data Available
    • Sequence=AAQ06680.1; Type=Frameshift; Positions=267; Evidence={ECO:0000305}; Sequence=CAB55985.3; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=CAD39045.1; Type=Frameshift; Positions=900; Evidence={ECO:0000305};

    Alternative splice isoforms for C15orf39 Gene


neXtProt entry for C15orf39 Gene

Proteomics data for C15orf39 Gene at MOPED

Post-translational modifications for C15orf39 Gene

  • Ubiquitination at Lys620 and Lys898
  • Modification sites at PhosphoSitePlus

Other Protein References for C15orf39 Gene

No data available for DME Specific Peptides for C15orf39 Gene

Domains for C15orf39 Gene

Protein Domains for C15orf39 Gene


Suggested Antigen Peptide Sequences for C15orf39 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C15orf39: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C15orf39 Gene

Function for C15orf39 Gene

Phenotypes for C15orf39 Gene

genes like me logo Genes that share phenotypes with C15orf39: view

Animal Model Products

CRISPR Products

miRNA for C15orf39 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for C15orf39 Gene

Localization for C15orf39 Gene

Subcellular locations from

Jensen Localization Image for C15orf39 Gene COMPARTMENTS Subcellular localization image for C15orf39 gene
Compartment Confidence
cytosol 2
nucleus 2
mitochondrion 1

Gene Ontology (GO) - Cellular Components for C15orf39 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA --
genes like me logo Genes that share ontologies with C15orf39: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for C15orf39 Gene

Pathways for C15orf39 Gene

SuperPathways for C15orf39 Gene

No Data Available

Interacting Proteins for C15orf39 Gene

Gene Ontology (GO) - Biological Process for C15orf39 Gene


No data available for Pathways by source for C15orf39 Gene

Transcripts for C15orf39 Gene

Unigene Clusters for C15orf39 Gene

Chromosome 15 open reading frame 39:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C15orf39

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C15orf39 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b
SP1: -
SP4: -
SP5: - -

Relevant External Links for C15orf39 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for C15orf39 Gene

mRNA expression in normal human tissues for C15orf39 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C15orf39 Gene

This gene is overexpressed in Whole Blood (9.9) and Testis (4.1).

Protein differential expression in normal tissues for C15orf39 Gene

This gene is overexpressed in Saliva (28.9), Pancreatic juice (21.4), Heart (11.7), and Placenta (7.0).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C15orf39 Gene

SOURCE GeneReport for Unigene cluster for C15orf39 Gene Hs.17936

genes like me logo Genes that share expressions with C15orf39: view

Expression partners for C15orf39 Gene

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for C15orf39 Gene

Orthologs for C15orf39 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C15orf39 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia C21H15orf39 35
  • 81.82 (n)
  • 77.42 (a)
C15orf39 36
  • 76 (a)
(Canis familiaris)
Mammalia C30H15orf39 35
  • 79.99 (n)
  • 75.82 (a)
C15orf39 36
  • 76 (a)
(Mus musculus)
Mammalia 1700017B05Rik 35
  • 78.48 (n)
  • 76.31 (a)
1700017B05Rik 16
1700017B05Rik 36
  • 77 (a)
(Pan troglodytes)
Mammalia C15H15orf39 35
  • 99.01 (n)
  • 98.38 (a)
C15orf39 36
  • 98 (a)
(Rattus norvegicus)
Mammalia RGD1305464 35
  • 79.55 (n)
  • 77.08 (a)
(Monodelphis domestica)
Mammalia C15orf39 36
  • 45 (a)
(Gallus gallus)
Aves C15orf39 36
  • 42 (a)
(Anolis carolinensis)
Reptilia C15orf39 36
  • 45 (a)
(Danio rerio)
Actinopterygii Dr.14401 35
C18H15orf39 36
  • 22 (a)
Species with no ortholog for C15orf39:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C15orf39 Gene

Gene Tree for C15orf39 (if available)
Gene Tree for C15orf39 (if available)

Paralogs for C15orf39 Gene Pseudogenes for C15orf39 Gene

genes like me logo Genes that share paralogs with C15orf39: view

No data available for Paralogs for C15orf39 Gene

Variants for C15orf39 Gene

Sequence variations from dbSNP and Humsavar for C15orf39 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs1045260 -- 75,212,112(+) GGATT(C/T)TGATG utr-variant-3-prime
rs1466663 -- 75,206,207(-) GTACC(C/T)GCCAT reference, synonymous-codon
rs1532155 -- 75,203,986(-) TTCAT(C/T)TCCTG intron-variant
rs1873379 - 75,206,403(-) GTGAG(C/G)CTGGG missense, reference
rs1873380 -- 75,201,256(-) CAGAC(C/G)GGCGC upstream-variant-2KB, intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C15orf39 Gene

Variant ID Type Subtype PubMed ID
nsv904383 CNV Gain 21882294
nsv833056 CNV Gain 17160897
nsv904384 CNV Loss 21882294
nsv904385 CNV Loss 21882294

Relevant External Links for C15orf39 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C15orf39 Gene

Disorders for C15orf39 Gene

No disorders were found for C15orf39 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for C15orf39 Gene

Publications for C15orf39 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Large-scale cDNA transfection screening for genes related to cancer development and progression. (PMID: 15498874) Wan D. … Gu J. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4
  4. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 3 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C15orf39 Gene

Sources for C15orf39 Gene

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