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Aliases for C14orf48 Gene

Aliases for C14orf48 Gene

  • Chromosome 14 Open Reading Frame 48 2
  • Long Intergenic Non-Protein Coding RNA 521 2 3 5
  • LINC00521 3 5
  • Putative Uncharacterized Protein Encoded By LINC00521 3
  • C14_5713 3

External Ids for C14orf48 Gene

Previous HGNC Symbols for C14orf48 Gene

  • LINC00521

Previous GeneCards Identifiers for C14orf48 Gene

  • GC14P088280
  • GC14P092453
  • GC14P093533
  • GC14P094463
  • GC14P074643

Summaries for C14orf48 Gene

GeneCards Summary for C14orf48 Gene

C14orf48 (Chromosome 14 Open Reading Frame 48) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C14orf48 Gene

Genomics for C14orf48 Gene

Regulatory Elements for C14orf48 Gene

Enhancers for C14orf48 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14G093953 2 FANTOM5 Ensembl ENCODE dbSUPER 12 -27.2 -27225 13.2 HDGF PKNOX1 FOXA2 MLX WRNIP1 ZFP64 SIN3A ARID4B FEZF1 DMAP1 SERPINA1 C14orf48 UBR7 IFI27L2 IFI27 RPSAP4 FAM181A-AS1 ASB2 DDX24 MIR4506
GH14G094025 1.1 ENCODE 16.1 +40.8 40791 4.1 PKNOX1 FOXA2 ARID4B SIN3A ZNF2 ZBTB7B ZNF207 ZNF548 FOS PAF1 DDX24 C14orf48 ASB2 IFI27L2 IFI27L1 IFI27 OTUB2 GC14M094050 GC14M094051
GH14G094020 1.1 Ensembl ENCODE 11.2 +35.0 34965 2.7 SOX13 CTCF SAP130 MLX ARID4B CEBPG DMAP1 ZIC2 HBP1 RARA IFI27L1 C14orf48 ASB2 DDX24 SERPINA2 OTUB2 GC14M094051 GC14M094050
GH14G093902 0.9 ENCODE 10.7 -84.4 -84387 0.5 ELF3 FOXA2 MLX ARID4B DNMT3B THRB RAD21 RARA GATA4 CREM ASB2 C14orf48 ENSG00000279593 FAM181A
GH14G093994 1.2 Ensembl ENCODE dbSUPER 8 +7.9 7930 1.2 PKNOX1 ZMYM3 MAX SIN3A ZFHX2 SCRT2 ZNF600 FOS SCRT1 BHLHE40 C14orf48 OTUB2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C14orf48 on UCSC Golden Path with GeneCards custom track

Genomic Location for C14orf48 Gene

Chromosome:
14
Start:
93,987,225 bp from pter
End:
94,011,695 bp from pter
Size:
24,471 bases
Orientation:
Plus strand

Genomic View for C14orf48 Gene

Genes around C14orf48 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C14orf48 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C14orf48 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C14orf48 Gene

Proteins for C14orf48 Gene

  • Protein details for C14orf48 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GTQ9
    Recommended name:
    Putative uncharacterized protein encoded by LINC00521
    Protein Accession:
    A0A1B0GTQ9

    Protein attributes for C14orf48 Gene

    Size:
    90 amino acids
    Molecular mass:
    10096 Da
    Quaternary structure:
    No Data Available
  • Protein details for C14orf48 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GUF5
    Recommended name:
    Chromosome 14 open reading frame 48, isoform CRA_b
    Protein Accession:
    A0A1B0GUF5

    Protein attributes for C14orf48 Gene

    Size:
    272 amino acids
    Molecular mass:
    31886 Da
    Quaternary structure:
    No Data Available
  • Protein details for C14orf48 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GVF2
    Recommended name:
    Putative uncharacterized protein encoded by LINC00521
    Protein Accession:
    A0A1B0GVF2

    Protein attributes for C14orf48 Gene

    Size:
    143 amino acids
    Molecular mass:
    16081 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C14orf48 Gene

Post-translational modifications for C14orf48 Gene

No Post-translational modifications

Other Protein References for C14orf48 Gene

No data available for DME Specific Peptides for C14orf48 Gene

Domains & Families for C14orf48 Gene

Protein Domains for C14orf48 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C14orf48: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C14orf48 Gene

Function for C14orf48 Gene

Gene Ontology (GO) - Molecular Function for C14orf48 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with C14orf48: view

Phenotypes for C14orf48 Gene

genes like me logo Genes that share phenotypes with C14orf48: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C14orf48 Gene

Localization for C14orf48 Gene

Gene Ontology (GO) - Cellular Components for C14orf48 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with C14orf48: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for C14orf48 Gene

Pathways & Interactions for C14orf48 Gene

SuperPathways for C14orf48 Gene

No Data Available

Interacting Proteins for C14orf48 Gene

Gene Ontology (GO) - Biological Process for C14orf48 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C14orf48 Gene

Drugs & Compounds for C14orf48 Gene

No Compound Related Data Available

Transcripts for C14orf48 Gene

mRNA/cDNA for C14orf48 Gene

(2) REFSEQ mRNAs :
(7) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C14orf48 Gene

Long intergenic non-protein coding RNA 521:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for C14orf48 Gene

No ASD Table

Relevant External Links for C14orf48 Gene

GeneLoc Exon Structure for
C14orf48
ECgene alternative splicing isoforms for
C14orf48

Expression for C14orf48 Gene

NURSA nuclear receptor signaling pathways regulating expression of C14orf48 Gene:

C14orf48

SOURCE GeneReport for Unigene cluster for C14orf48 Gene:

Hs.143845
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C14orf48 Gene

Orthologs for C14orf48 Gene

Evolution for C14orf48 Gene

ENSEMBL:
Gene Tree for C14orf48 (if available)
TreeFam:
Gene Tree for C14orf48 (if available)

No data available for Orthologs for C14orf48 Gene

Paralogs for C14orf48 Gene

No data available for Paralogs for C14orf48 Gene

Variants for C14orf48 Gene

Sequence variations from dbSNP and Humsavar for C14orf48 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1000086751 -- 94,008,862(+) ACCTG(C/T)CTGCC intron-variant, nc-transcript-variant
rs1000266733 -- 94,001,841(+) GCGTG(A/G)CATCA intron-variant, nc-transcript-variant
rs1000461381 -- 94,002,344(+) AGTAC(A/G)GTGGA intron-variant
rs1000605362 -- 94,000,585(+) GGTGG(C/T)GAGCT intron-variant
rs1000980448 -- 94,007,672(+) CCTAG(G/T)CTCAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C14orf48 Gene

Variant ID Type Subtype PubMed ID
nsv1052048 CNV gain 25217958
nsv1405 CNV insertion 18451855
nsv565594 CNV gain 21841781
nsv565617 CNV loss 21841781
nsv565620 CNV loss 21841781

Relevant External Links for C14orf48 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C14orf48

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C14orf48 Gene

Disorders for C14orf48 Gene

Relevant External Links for C14orf48

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C14orf48

No disorders were found for C14orf48 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C14orf48 Gene

Publications for C14orf48 Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  2. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual J.F. … Vidal M. (Nature 2005) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  4. Sequence organization and matrix attachment regions of the human serine protease inhibitor gene cluster at 14q32.1. (PMID: 15014966) Namciu S.J. … Fournier R.E. (Mamm. Genome 2004) 3 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 64

Products for C14orf48 Gene

Sources for C14orf48 Gene

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