C14orf39 Gene
protein-coding GIFtS: 37
GCID: GC14M060863
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chromosome 14 open reading frame 39
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Aliases
for C14orf39 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Chromosome 14 Open Reading Frame 391 2 | | Six6 Opposite Strand Transcript 12 3 | | SIX6OS11 | | Six6os12 | | Protein SIX6OS12 |
Export aliases for C14orf39 gene to outside databasesPrevious GC identifers: GC14M054696 GC14M058853 GC14M058892 GC14M059972 GC14M041066 |
Summaries
for C14orf39 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
UniProtKB/Swiss-Prot: S6OS1_HUMAN, Q8N1H7Function: May be involved in eye development through regulation of the SIX6 transcription factor
|
Genomic Views
for C14orf39 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000014.8 NC_018925.1 NT_026437.12
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the C14orf39 gene promoter:
Nkx3-1 Nkx3-1 v4 RP58 GCNF Nkx3-1 v1 C/EBPalpha Nkx3-1 v2 FOXJ2 (long isoform) Nkx3-1 v3 FOXJ2
Other transcription factors
Search SABiosciences Chromatin IP Primers for C14orf39
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat C14orf39 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 14q23.1 Ensembl cytogenetic band: 14q23.1 HGNC cytogenetic band: 14q23.1C14orf39 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 14 GeneLoc Exon Structure GeneLoc location for GC14M060863: view genomic region
(about GC identifiers)
Start:
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60,863,187 bp from pter |
End:
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60,982,261 bp from pter |
Size:
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119,075 bases |
Orientation:
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minus strand |
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Proteins
for C14orf39 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: S6OS1_HUMAN, Q8N1H7 (See
protein sequence)Recommended Name: Protein SIX6OS1 Size: 587 amino acids; 68166 Da
Secondary accessions: Q08AQ4Explore the universe of human proteins at neXtProt for C14orf39: NX_Q8N1H7
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q8N1H7
C14orf39 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_777638.2
ENSEMBL proteins: ENSP00000451937 ENSP00000324920 ENSP00000450476 ENSP00000451665 ENSP00000451441
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005575 | cellular_component |
ND | -- |
C14orf39 for ontologies About GeneDecksing
C14orf39 Antibody Products:
Assay Products for C14orf39: |
Protein
Domains /
Families
for C14orf39 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: Q8N1H7 |
Function
for C14orf39 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: S6OS1_HUMAN, Q8N1H7Function: May be involved in eye development through regulation of the SIX6 transcription factor
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for C14orf39 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for C14orf39
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: C14orf39 (NM_174978) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for C14orf39 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat C14orf39 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C14orf39 |
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0003674 | molecular_function |
ND | -- |
C14orf39 for ontologies About GeneDecksing
1 GenomeRNAi human phenotype for C14orf39:
|
Pathways & Interactions
for C14orf39 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for C14orf39
Gene Ontology (GO): 2 biological process terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0007275 | multicellular organismal development |
IEA | -- | | GO:0051090 | regulation of sequence-specific DNA binding transcription factor activity |
NAS | 15703187 |
C14orf39 for ontologies About GeneDecksing
|
Drugs & Compounds
for C14orf39 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for C14orf39
Search CenterWatch for drugs/clinical trials and news about C14orf39 / S6OS1
|
Transcripts
for C14orf39 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for C14orf39 gene: NM_174978.2 Unigene Cluster for C14orf39: Chromosome 14 open reading frame 39 Hs.335754 [show with all ESTs]Unigene Representative Sequence: AL8322195 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000498565 ENST00000321731(uc001xez.4 uc010apo.3) ENST00000557138
ENST00000555476 ENST00000556799
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for C14orf39 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for C14orf39
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: C14orf39 (NM_174978) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for C14orf39 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat C14orf39 |
Additional cDNA sequence: AK098187.1 AL832219.1 BC125070.1 BC125071.1 3 DOTS entries: DT.97779429 DT.120782768 DT.97815858 8 AceView cDNA sequences: AW188354 AL832219 NM_174978 AI024589 BQ435611 AW511757 AK098187 BF087559
GeneLoc Exon Structure
|
Expression
for C14orf39 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| C14orf39 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GTACAATTCT
About this image
See C14orf39 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for C14orf39
SOURCE GeneReport for Unigene cluster: Hs.335754
UniProtKB/Swiss-Prot: S6OS1_HUMAN, Q8N1H7Tissue specificity: Highest expression in retina, skeletal muscle and colon
SABiosciences Custom PCR Arrays for C14orf39
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for C14orf39
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat C14orf39 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat C14orf39 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat C14orf39 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C14orf39 |
Orthologs
for C14orf39 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for C14orf39 gene from 3/9 species (see all 9) About this table
ENSEMBL Gene Tree for C14orf39 (if available)
TreeFam Gene Tree for C14orf39 (if available) |
Paralogs
for C14orf39 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for C14orf39 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 14 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for C14orf39 (60863187 - 60982261 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for C14orf39: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing C14orf39 |
|
Disorders
/ Diseases
for C14orf39 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for C14orf39 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for C14orf39 gene integrated from 9 sources:
(articles sorted by number of sources associating them with C14orf39) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Natural antisense transcripts associated with genes involved in eye development. (PubMed id 15703187)1, 2 Alfano G.... Banfi S. (2005)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- The DNA sequence and analysis of human chromosome 14. (PubMed id 12508121)2 Heilig R.... Weissenbach J. (2003)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
|
External Searches for C14orf39 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing C14orf39 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing C14orf39 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing C14orf39 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for C14orf39 | Pharmacogenomics, SNPs, Pathways |
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| | |
About This Section
| Patent Information for C14orf39 gene:
Search GeneIP for patents involving C14orf39
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for C14orf39 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
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 | |
 |
| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for C14orf39 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for C14orf39 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for C14orf39 | | | OriGene Protein Over-expression Lysate for C14orf39 | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for C14orf39 | | Browse 3'-UTR reporter clones for miRNA target validation | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for C14orf39 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for C14orf39 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for C14orf39 | | OriGene Custom Protein Services for C14orf39 | | | OriGene Custom Immunoassay Development | | |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat C14orf39 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing C14orf39 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat C14orf39 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat C14orf39 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat C14orf39 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat C14orf39 |
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 | | | C14orf39 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C14orf39 |
|  |  |  | | | | Search ThermoFisher Antibodies for C14orf39 |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat C14orf39 |
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