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Aliases for C12orf80 Gene

Aliases for C12orf80 Gene

  • Chromosome 12 Open Reading Frame 80 2 3

External Ids for C12orf80 Gene

Previous GeneCards Identifiers for C12orf80 Gene

  • GC12M052600

Summaries for C12orf80 Gene

GeneCards Summary for C12orf80 Gene

C12orf80 (Chromosome 12 Open Reading Frame 80) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C12orf80 Gene

Genomics for C12orf80 Gene

Genomic Location for C12orf80 Gene

Chromosome:
12
Start:
52,205,581 bp from pter
End:
52,210,855 bp from pter
Size:
5,275 bases
Orientation:
Minus strand

Genomic View for C12orf80 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for C12orf80 Gene

No data available for Regulatory Elements for C12orf80 Gene

Proteins for C12orf80 Gene

Post-translational modifications for C12orf80 Gene

No Post-translational modifications

Other Protein References for C12orf80 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for C12orf80 Gene

Domains & Families for C12orf80 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C12orf80 Gene

Function for C12orf80 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C12orf80 Gene

Localization for C12orf80 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C12orf80 Gene

Pathways & Interactions for C12orf80 Gene

SuperPathways for C12orf80 Gene

No Data Available

Interacting Proteins for C12orf80 Gene

Gene Ontology (GO) - Biological Process for C12orf80 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C12orf80 Gene

Drugs & Compounds for C12orf80 Gene

No Compound Related Data Available

Transcripts for C12orf80 Gene

mRNA/cDNA for C12orf80 Gene

(1) REFSEQ mRNAs :
(4) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C12orf80 Gene

No ASD Table

Relevant External Links for C12orf80 Gene

GeneLoc Exon Structure for
C12orf80
ECgene alternative splicing isoforms for
C12orf80

Expression for C12orf80 Gene

mRNA expression in normal human tissues for C12orf80 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C12orf80 Gene

This gene is overexpressed in Testis (x50.1).
genes like me logo Genes that share expression patterns with C12orf80: view

Primer Products

No data available for Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for C12orf80 Gene

Orthologs for C12orf80 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C12orf80 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC100608471 35
  • 98.37 (n)
  • 96.5 (a)
Species with no ortholog for C12orf80:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C12orf80 Gene

ENSEMBL:
Gene Tree for C12orf80 (if available)
TreeFam:
Gene Tree for C12orf80 (if available)

Paralogs for C12orf80 Gene

No data available for Paralogs for C12orf80 Gene

Variants for C12orf80 Gene

Sequence variations from dbSNP and Humsavar for C12orf80 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs1317997 -- 52,207,498(-) CACCA(C/T)TGGGG intron-variant
rs1902766 -- 52,208,174(+) GCCCC(C/T)GATCT synonymous-codon, reference
rs1902767 -- 52,208,229(+) GCCTC(C/T)GTAAT missense, reference
rs3741724 -- 52,206,119(-) TGTTC(A/G)TTAAG reference, missense
rs4144987 -- 52,206,787(-) GCTGA(C/G)CACAG intron-variant

Relevant External Links for C12orf80 Gene

HapMap Linkage Disequilibrium report
C12orf80

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for C12orf80 Gene

Disorders for C12orf80 Gene

Relevant External Links for C12orf80

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C12orf80
genes like me logo Genes that share disorders with C12orf80: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C12orf80 Gene

Publications for C12orf80 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 67
  3. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 67

Products for C12orf80 Gene

Sources for C12orf80 Gene

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