Aliases for C12orf77 Gene
External Ids for C12orf77 Gene
- HGNC: 27282
- Entrez Gene: 196415
- Ensembl: ENSG00000226397
- UniProtKB: C9JDV5
Previous GeneCards Identifiers for C12orf77 Gene
- GC12M025038
- GC12M025146
- GC12M024916
Summaries for C12orf77 Gene
GeneCards Summary for C12orf77 Gene
C12orf77 (Chromosome 12 Open Reading Frame 77) is a Protein Coding gene.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C12orf77 Gene
Genomics for C12orf77 Gene
Regulatory Elements for C12orf77 Gene
Enhancers for C12orf77 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH12G024995 | 1.5 | FANTOM5 Ensembl ENCODE | 23.6 | +8.8 | 8817 | 3.7 | TBP PKNOX1 TBL1XR1 SIN3A BMI1 GLI4 ZBTB40 CBX5 ELK1 ZNF143 | C12orf77 LRMP LOC645177 |
| GH12G024951 | 1.6 | FANTOM5 ENCODE dbSUPER | 6.2 | +54.2 | 54185 | 1.8 | PKNOX1 ATF1 ARNT ZNF143 ZNF207 JUNB NCOA1 TBX21 ZNF592 SREBF1 | LRMP BCAT1 C12orf77 KRAS BRI3P2 |
| GH12G025004 | 0.7 | ENCODE | 12.9 | +0.9 | 941 | 1.2 | SRF TBP MTA2 BHLHE40 BMI1 EBF1 DPF2 TBX21 EP300 RAD51 | C12orf77 BCAT1 LRMP |
| GH12G025057 | 1.3 | FANTOM5 ENCODE dbSUPER | 6.1 | -52.4 | -52394 | 1.6 | TBP CTCF RAD21 YY1 POLR2A EED SMC3 IKZF2 CREM MTA2 | LRMP C12orf77 CASC1 CENPUP2 |
| GH12G025050 | 1.5 | FANTOM5 ENCODE dbSUPER | 4.8 | -47.5 | -47516 | 6.6 | HDGF PKNOX1 ATF1 WRNIP1 SIN3A YY1 ZNF766 FOS JUNB TBX21 | LRMP CASC1 ETFRF1 C12orf77 KRAS CENPUP2 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around C12orf77 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for C12orf77 Gene
- Chromosome:
- 12
- Start:
- 24,993,424 bp from pter
- End:
- 25,006,403 bp from pter
- Size:
- 12,980 bases
- Orientation:
- Minus strand
Genomic View for C12orf77 Gene
Genes around C12orf77 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 12p12.1 by Ensembl
- 12p12.1 by Entrez Gene
- 12p12.1 by HGNC
C12orf77 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for C12orf77 Gene
Proteins for C12orf77 Gene
-
Protein details for C12orf77 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- C9JDV5-CL097_HUMAN
- Recommended name:
- Putative uncharacterized protein C12orf77
- Protein Accession:
- C9JDV5
Protein attributes for C12orf77 Gene
- Size:
- 145 amino acids
- Molecular mass:
- 16178 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for C12orf77 Gene
Other Protein References for C12orf77 Gene
- REFSEQ proteins:
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for C12orf77
- Origene Custom Protein Services for C12orf77
- Search GeneTex for Proteins for C12orf77
Assay Products
No data available for DME Specific Peptides for C12orf77 Gene
Domains & Families for C12orf77 Gene
Protein Domains for C12orf77 Gene
- ProtoNet:
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C12orf77 Gene
Function for C12orf77 Gene
Phenotypes for C12orf77 Gene
- GenomeRNAi human phenotypes for C12orf77:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for C12orf77
-
-
ViGene Biosciences lentiviral particle packaged cDNA for C12orf77 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for C12orf77 gene
- Search ViGene Biosciences for C12orf77
CRISPR Products
-
OriGene CRISPR knockouts for C12orf77
-
Santa Cruz Biotechnology (SCBT) CRISPR for C12orf77
- GenScript: Design CRISPR guide RNA sequences for C12orf77
miRNA Products
- Search ViGene Biosciences for C12orf77
Inhibitory RNA Products
- Origene RNAi, siRNA, and shRNA products in human, mouse, rat for C12orf77
- Browse OriGene Inhibitory RNA Products For C12orf77
-
ViGene Biosciences ready-to-package AAV shRNAs for C12orf77 gene
Clone Products
-
OriGene ORF clones in human for C12orf77
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- VectorBuilder custom plasmid, inducible vectors for C12orf77
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for C12orf77
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
-
Horizon Cell Lines for C12orf77
-
ViGene Biosciences adenoviral particle packaged cDNA for C12orf77 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for C12orf77 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for C12orf77 gene
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C12orf77 Gene
Localization for C12orf77 Gene
| Compartment | Confidence |
|---|---|
| extracellular | 2 |
| plasma membrane | 1 |
| nucleus | 1 |
| cytosol | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C12orf77 Gene
Transcripts for C12orf77 Gene
mRNA/cDNA for C12orf77 Gene
- (2) REFSEQ mRNAs :
- (3) Additional mRNA sequences :
- (19) Selected AceView cDNA sequences:
- (3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for C12orf77 Gene
CRISPR Products
-
OriGene CRISPR knockouts for C12orf77
-
Santa Cruz Biotechnology (SCBT) CRISPR for C12orf77
- GenScript: Design CRISPR guide RNA sequences for C12orf77
miRNA Products
- Search ViGene Biosciences for C12orf77
Inhibitory RNA Products
- Origene RNAi, siRNA, and shRNA products in human, mouse, rat for C12orf77
- Browse OriGene Inhibitory RNA Products For C12orf77
-
ViGene Biosciences ready-to-package AAV shRNAs for C12orf77 gene
Clone Products
-
OriGene ORF clones in human for C12orf77
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- VectorBuilder custom plasmid, inducible vectors for C12orf77
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for C12orf77
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for C12orf77 Gene
NURSA nuclear receptor signaling pathways regulating expression of C12orf77 Gene:
C12orf77SOURCE GeneReport for Unigene cluster for C12orf77 Gene:
Hs.434453Primer Products
-
OriGene qPCR primer pairs for C12orf77
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C12orf77 Gene
Orthologs for C12orf77 Gene
This gene was present in the common ancestor of human and chimp.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | C12H12orf77 34 |
|
||
| C12orf77 35 |
|
OneToOne |
- Species where no ortholog for C12orf77 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- cow (Bos Taurus)
- dog (Canis familiaris)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- mouse (Mus musculus)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for C12orf77 Gene
No data available for Paralogs for C12orf77 Gene
Variants for C12orf77 Gene
| SNP ID | Clin | Chr 12 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1001261393 | -- | 24,995,407(+) | CATGG(G/T)ATCAA | intron-variant | |
| rs1002075449 | -- | 24,994,773(+) | AGTGG(A/G)TTTTG | intron-variant | |
| rs1002713233 | -- | 24,994,417(+) | ACTTT(C/G)GGAGG | intron-variant | |
| rs1002730003 | -- | 24,994,601(+) | GTGAG(A/C)CAAGA | intron-variant | |
| rs1002759367 | -- | 24,994,937(+) | TACTG(A/G)CTAAC | intron-variant |
Residual Variation Intolerance Score:
72.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
2.11;
38.54% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for C12orf77 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- C12orf77
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C12orf77 Gene
Disorders for C12orf77 Gene
Relevant External Links for C12orf77
No disorders were found for C12orf77 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C12orf77 Gene
Publications for C12orf77 Gene
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
- Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel D.P. … Karasik D. (BMC Med. Genet. 2007) 46 64
- The finished DNA sequence of human chromosome 12. (PMID: 16541075) Scherer S.E. … Gibbs R.A. (Nature 2006) 4 64
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
Products for C12orf77 Gene
- Browse R&D Systems for Antibodies
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- Browse Primary Antibodies
- Browse Proteins and Enzymes
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- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for C12orf77
- Origene Custom Protein Services for C12orf77
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for C12orf77
- Browse OriGene Inhibitory RNA Products For C12orf77
- OriGene qPCR primer pairs for C12orf77
- OriGene CRISPR knockouts for C12orf77
- OriGene ORF clones in human for C12orf77
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For C12orf77
- GenScript: Next-day shipping cDNA ORF clone for C12orf77 in any vector
- GenScript Custom Purified and Recombinant Proteins Services for C12orf77
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- GenScript: Design CRISPR guide RNA sequences for C12orf77
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- Browse Sino Biological cDNA Clones
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- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Invitrogen Antibodies for C12orf77
- ViGene Biosciences adenoviral particle packaged cDNA for C12orf77 gene
- ViGene Biosciences lentiviral particle packaged cDNA for C12orf77 gene
- ViGene Biosciences ready-to-package AAV shRNAs for C12orf77 gene
- Search ViGene Biosciences for C12orf77
- Horizon Cell Lines for C12orf77
- Cyagen custom Knockout/knockin (KOKI) mouse models for C12orf77
- VectorBuilder custom plasmid, inducible vectors for C12orf77
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for C12orf77
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for C12orf77 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer