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Aliases for C12orf77 Gene

Aliases for C12orf77 Gene

  • Chromosome 12 Open Reading Frame 77 2 3

External Ids for C12orf77 Gene

Summaries for C12orf77 Gene

GeneCards Summary for C12orf77 Gene

C12orf77 (Chromosome 12 Open Reading Frame 77) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C12orf77 Gene

Genomics for C12orf77 Gene

Genomic Location for C12orf77 Gene

Start:
24,993,424 bp from pter
End:
24,997,519 bp from pter
Size:
4,096 bases
Orientation:
Minus strand

Genomic View for C12orf77 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C12orf77 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C12orf77 Gene

No data available for Regulatory Elements for C12orf77 Gene

Proteins for C12orf77 Gene

  • Protein details for C12orf77 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    C9JDV5-CL097_HUMAN
    Recommended name:
    Putative uncharacterized protein C12orf77
    Protein Accession:
    C9JDV5
    Secondary Accessions:

    Protein attributes for C12orf77 Gene

    Size:
    145 amino acids
    Molecular mass:
    16178 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C12orf77 Gene

Proteomics data for C12orf77 Gene at MOPED

Post-translational modifications for C12orf77 Gene

No Post-translational modifications

Other Protein References for C12orf77 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C12orf77 Gene

Domains for C12orf77 Gene

Protein Domains for C12orf77 Gene

ProtoNet:
genes like me logo Genes that share domains with C12orf77: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C12orf77 Gene

Function for C12orf77 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C12orf77 Gene

Localization for C12orf77 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C12orf77 Gene COMPARTMENTS Subcellular localization image for C12orf77 gene
Compartment Confidence
extracellular 2
cytosol 1
nucleus 1
plasma membrane 1

No data available for Gene Ontology (GO) - Cellular Components for C12orf77 Gene

Pathways for C12orf77 Gene

SuperPathways for C12orf77 Gene

No Data Available

Interacting Proteins for C12orf77 Gene

Gene Ontology (GO) - Biological Process for C12orf77 Gene

None

No data available for Pathways by source for C12orf77 Gene

Transcripts for C12orf77 Gene

mRNA/cDNA for C12orf77 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(19) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C12orf77 Gene

Chromosome 12 open reading frame 77:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C12orf77 Gene

No ASD Table

Relevant External Links for C12orf77 Gene

GeneLoc Exon Structure for
C12orf77
ECgene alternative splicing isoforms for
C12orf77

Expression for C12orf77 Gene

mRNA expression in normal human tissues for C12orf77 Gene

SOURCE GeneReport for Unigene cluster for C12orf77 Gene Hs.434453

genes like me logo Genes that share expressions with C12orf77: view

Orthologs for C12orf77 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C12orf77 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C12H12orf77 36
  • 98.16 (n)
  • 97.24 (a)
C12orf77 37
  • 97 (a)
OneToOne
Species with no ortholog for C12orf77:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C12orf77 Gene

ENSEMBL:
Gene Tree for C12orf77 (if available)
TreeFam:
Gene Tree for C12orf77 (if available)

Paralogs for C12orf77 Gene

No data available for Paralogs for C12orf77 Gene

Variants for C12orf77 Gene

Sequence variations from dbSNP and Humsavar for C12orf77 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs699029 -- 24,993,936(-) AAGAG(C/T)CTGCA utr-variant-3-prime
rs699030 -- 24,994,366(-) GCAGT(C/G)TCTTC intron-variant
rs699031 -- 24,997,532(-) ATGAC(A/G)TGGGT upstream-variant-2KB
rs699032 -- 24,998,193(+) AGGAA(C/T)TGTTC upstream-variant-2KB
rs699033 -- 24,998,293(+) AGCCT(A/G)TACCA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C12orf77 Gene

Variant ID Type Subtype PubMed ID
esv2422312 CNV Duplication 17116639
nsv898920 CNV Gain 21882294
nsv469169 CNV Gain 19166990
nsv469173 CNV Gain 19166990
nsv898921 CNV Gain 21882294
nsv469174 CNV Loss 19166990

Relevant External Links for C12orf77 Gene

HapMap Linkage Disequilibrium report
C12orf77

Disorders for C12orf77 Gene

Relevant External Links for C12orf77

Genetic Association Database (GAD)
C12orf77
genes like me logo Genes that share disorders with C12orf77: view

No data available for UniProtKB/Swiss-Prot for C12orf77 Gene

Publications for C12orf77 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel D.P. … Karasik D. (BMC Med. Genet. 2007) 49
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. The finished DNA sequence of human chromosome 12. (PMID: 16541075) Scherer S.E. … Gibbs R.A. (Nature 2006) 4

Products for C12orf77 Gene

Sources for C12orf77 Gene

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