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Aliases for C12orf54 Gene

Aliases for C12orf54 Gene

  • Chromosome 12 Open Reading Frame 54 2 3
  • Uncharacterized Protein C12orf54 3
  • HSD-29 3
  • HSD-30 3

External Ids for C12orf54 Gene

Summaries for C12orf54 Gene

GeneCards Summary for C12orf54 Gene

C12orf54 (Chromosome 12 Open Reading Frame 54) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C12orf54 Gene

Genomics for C12orf54 Gene

Genomic Location for C12orf54 Gene

Start:
48,482,500 bp from pter
End:
48,496,514 bp from pter
Size:
14,015 bases
Orientation:
Plus strand

Genomic View for C12orf54 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C12orf54 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C12orf54 Gene

Regulatory Elements for C12orf54 Gene

Proteins for C12orf54 Gene

  • Protein details for C12orf54 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6X4T0-CL054_HUMAN
    Recommended name:
    Uncharacterized protein C12orf54
    Protein Accession:
    Q6X4T0
    Secondary Accessions:
    • Q6X4S9
    • Q8N5S2

    Protein attributes for C12orf54 Gene

    Size:
    127 amino acids
    Molecular mass:
    14485 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C12orf54 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C12orf54 Gene

Proteomics data for C12orf54 Gene at MOPED

Post-translational modifications for C12orf54 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C12orf54 Gene

No data available for DME Specific Peptides for C12orf54 Gene

Domains for C12orf54 Gene

Protein Domains for C12orf54 Gene

ProtoNet:
genes like me logo Genes that share domains with C12orf54: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C12orf54 Gene

Function for C12orf54 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C12orf54 Gene

Localization for C12orf54 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C12orf54 Gene COMPARTMENTS Subcellular localization image for C12orf54 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Gene Ontology (GO) - Cellular Components for C12orf54 Gene

Pathways for C12orf54 Gene

SuperPathways for C12orf54 Gene

No Data Available

Interacting Proteins for C12orf54 Gene

Gene Ontology (GO) - Biological Process for C12orf54 Gene

None

No data available for Pathways by source for C12orf54 Gene

Transcripts for C12orf54 Gene

Unigene Clusters for C12orf54 Gene

Chromosome 12 open reading frame 54:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C12orf54 Gene

No ASD Table

Relevant External Links for C12orf54 Gene

GeneLoc Exon Structure for
C12orf54
ECgene alternative splicing isoforms for
C12orf54

Expression for C12orf54 Gene

mRNA expression in normal human tissues for C12orf54 Gene

mRNA differential expression in normal tissues according to GTEx for C12orf54 Gene

This gene is overexpressed in Testis (36.4).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C12orf54 Gene

SOURCE GeneReport for Unigene cluster for C12orf54 Gene Hs.98202

genes like me logo Genes that share expressions with C12orf54: view

Orthologs for C12orf54 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C12orf54 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C5H12orf54 36
  • 77.42 (n)
  • 58.06 (a)
C5H12orf54 37
  • 51 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C12orf54 37
  • 67 (a)
OneToOne
C27H12orf54 36
  • 80.19 (n)
  • 66.98 (a)
mouse
(Mus musculus)
Mammalia 1700031M16Rik 16
Species with no ortholog for C12orf54:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C12orf54 Gene

ENSEMBL:
Gene Tree for C12orf54 (if available)
TreeFam:
Gene Tree for C12orf54 (if available)

Paralogs for C12orf54 Gene

No data available for Paralogs for C12orf54 Gene

Variants for C12orf54 Gene

Sequence variations from dbSNP and Humsavar for C12orf54 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs9268 -- 48,494,906(+) CAGCT(C/G)TTCAG reference, synonymous-codon, nc-transcript-variant
rs11458 - 48,494,811(-) ATCTG(A/G)AGGCC reference, missense, nc-transcript-variant
rs2068293 -- 48,486,307(+) AAAAG(C/G)TACCT intron-variant
rs2464565 -- 48,483,291(-) TTGTT(C/T)TCAGA utr-variant-5-prime, intron-variant, nc-transcript-variant
rs2468352 -- 48,494,100(-) ctggg(A/G)ttaca intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C12orf54 Gene

Variant ID Type Subtype PubMed ID
nsv510295 CNV Loss 20534489

Relevant External Links for C12orf54 Gene

HapMap Linkage Disequilibrium report
C12orf54

Disorders for C12orf54 Gene

No disorders were found for C12orf54 Gene.

No data available for UniProtKB/Swiss-Prot for C12orf54 Gene

Publications for C12orf54 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for C12orf54 Gene

Sources for C12orf54 Gene

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