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Aliases for C12orf42 Gene

Aliases for C12orf42 Gene

  • Chromosome 12 Open Reading Frame 42 2 3

External Ids for C12orf42 Gene

Summaries for C12orf42 Gene

GeneCards Summary for C12orf42 Gene

C12orf42 (Chromosome 12 Open Reading Frame 42) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C12orf42 Gene

Genomics for C12orf42 Gene

Genomic Location for C12orf42 Gene

Start:
103,237,591 bp from pter
End:
103,496,010 bp from pter
Size:
258,420 bases
Orientation:
Minus strand

Genomic View for C12orf42 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C12orf42 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C12orf42 Gene

Regulatory Elements for C12orf42 Gene

Proteins for C12orf42 Gene

  • Protein details for C12orf42 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96LP6-CL042_HUMAN
    Recommended name:
    Uncharacterized protein C12orf42
    Protein Accession:
    Q96LP6
    Secondary Accessions:
    • Q49A64
    • Q4G0S2

    Protein attributes for C12orf42 Gene

    Size:
    360 amino acids
    Molecular mass:
    39738 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C12orf42 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C12orf42 Gene

Proteomics data for C12orf42 Gene at MOPED

Post-translational modifications for C12orf42 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for C12orf42 Gene

Domains for C12orf42 Gene

Protein Domains for C12orf42 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with C12orf42: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C12orf42 Gene

Function for C12orf42 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C12orf42 Gene

Localization for C12orf42 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C12orf42 Gene COMPARTMENTS Subcellular localization image for C12orf42 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Gene Ontology (GO) - Cellular Components for C12orf42 Gene

Pathways for C12orf42 Gene

SuperPathways for C12orf42 Gene

No Data Available

Interacting Proteins for C12orf42 Gene

Gene Ontology (GO) - Biological Process for C12orf42 Gene

None

No data available for Pathways by source for C12orf42 Gene

Transcripts for C12orf42 Gene

Unigene Clusters for C12orf42 Gene

Chromosome 12 open reading frame 42:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C12orf42 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b
SP1:
SP2: - -
SP3: -

Relevant External Links for C12orf42 Gene

GeneLoc Exon Structure for
C12orf42
ECgene alternative splicing isoforms for
C12orf42

Expression for C12orf42 Gene

mRNA expression in normal human tissues for C12orf42 Gene

mRNA differential expression in normal tissues according to GTEx for C12orf42 Gene

This gene is overexpressed in Testis (38.4) and Spleen (4.5).

SOURCE GeneReport for Unigene cluster for C12orf42 Gene Hs.534649

genes like me logo Genes that share expressions with C12orf42: view

Orthologs for C12orf42 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C12orf42 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C12H12orf42 36
  • 99.44 (n)
  • 98.89 (a)
C12orf42 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C5H12orf42 36
  • 74 (n)
  • 62.67 (a)
mouse
(Mus musculus)
Mammalia 1700113H08Rik 36
  • 65.73 (n)
  • 48.28 (a)
1700113H08Rik 16
1700113H08Rik 37
  • 46 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1560034 36
  • 64.54 (n)
  • 47.11 (a)
Species with no ortholog for C12orf42:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C12orf42 Gene

ENSEMBL:
Gene Tree for C12orf42 (if available)
TreeFam:
Gene Tree for C12orf42 (if available)

Paralogs for C12orf42 Gene

Pseudogenes.org Pseudogenes for C12orf42 Gene

genes like me logo Genes that share paralogs with C12orf42: view

No data available for Paralogs for C12orf42 Gene

Variants for C12orf42 Gene

Sequence variations from dbSNP and Humsavar for C12orf42 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs883064 -- 103,280,299(-) CTTTT(C/T)TGTTG intron-variant
rs939629 -- 103,332,679(+) TACtg(G/T)gtaga intron-variant
rs939630 -- 103,332,682(+) TGGGT(A/T)GAATT intron-variant
rs1112754 -- 103,414,687(-) atgag(C/T)gtgaa intron-variant
rs1133634 -- 103,302,139(-) CCTTT(C/T)TAGGC reference, missense, intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C12orf42 Gene

Variant ID Type Subtype PubMed ID
nsv826506 CNV Loss 20364138
dgv1485n71 CNV Gain 21882294
esv269933 CNV Insertion 20981092
esv22217 CNV Loss 19812545
dgv309e199 CNV Deletion 23128226
nsv521147 CNV Loss 19592680

Relevant External Links for C12orf42 Gene

HapMap Linkage Disequilibrium report
C12orf42

Disorders for C12orf42 Gene

Relevant External Links for C12orf42

Genetic Association Database (GAD)
C12orf42
Human Genome Epidemiology (HuGE) Navigator
C12orf42
genes like me logo Genes that share disorders with C12orf42: view

No data available for UniProtKB/Swiss-Prot for C12orf42 Gene

Publications for C12orf42 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. A genome-wide association study identifies a region at chromosome 12 as a potential susceptibility locus for restenosis after percutaneous coronary intervention. (PMID: 21878436) Sampietro M.L. … Jukema J.W. (Hum. Mol. Genet. 2011) 3 49
  4. Framingham Heart Study genome-wide association: results for pulmonary function measures. (PMID: 17903307) Wilk J.B. … O'Connor G.T. (BMC Med. Genet. 2007) 49
  5. The finished DNA sequence of human chromosome 12. (PMID: 16541075) Scherer S.E. … Gibbs R.A. (Nature 2006) 4

Products for C12orf42 Gene

Sources for C12orf42 Gene

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