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Aliases for C12orf29 Gene

Aliases for C12orf29 Gene

  • Chromosome 12 Open Reading Frame 29 2 3

External Ids for C12orf29 Gene

Summaries for C12orf29 Gene

GeneCards Summary for C12orf29 Gene

C12orf29 (Chromosome 12 Open Reading Frame 29) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C12orf29 Gene

Genomics for C12orf29 Gene

Genomic Location for C12orf29 Gene

Start:
88,033,846 bp from pter
End:
88,050,160 bp from pter
Size:
16,315 bases
Orientation:
Plus strand

Genomic View for C12orf29 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C12orf29 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C12orf29 Gene

Regulatory Elements for C12orf29 Gene

Proteins for C12orf29 Gene

  • Protein details for C12orf29 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N999-CL029_HUMAN
    Recommended name:
    Uncharacterized protein C12orf29
    Protein Accession:
    Q8N999
    Secondary Accessions:
    • Q569K5
    • Q6AWA8
    • Q6PEK5
    • Q8IYQ5
    • Q9NT75

    Protein attributes for C12orf29 Gene

    Size:
    325 amino acids
    Molecular mass:
    37490 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH35136.2; Type=Erroneous translation; Note=Wrong choice of frame.; Evidence={ECO:0000305}; Sequence=AAH58014.1; Type=Erroneous translation; Note=Wrong choice of frame.; Evidence={ECO:0000305};

    Alternative splice isoforms for C12orf29 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C12orf29 Gene

Proteomics data for C12orf29 Gene at MOPED

Post-translational modifications for C12orf29 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys212

Other Protein References for C12orf29 Gene

No data available for DME Specific Peptides for C12orf29 Gene

Domains for C12orf29 Gene

Protein Domains for C12orf29 Gene

ProtoNet:
genes like me logo Genes that share domains with C12orf29: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C12orf29 Gene

Function for C12orf29 Gene

miRNA for C12orf29 Gene

miRTarBase miRNAs that target C12orf29

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C12orf29 Gene

Localization for C12orf29 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C12orf29 Gene COMPARTMENTS Subcellular localization image for C12orf29 gene
Compartment Confidence
mitochondrion 2
cytosol 1
nucleus 1
peroxisome 1

No data available for Gene Ontology (GO) - Cellular Components for C12orf29 Gene

Pathways for C12orf29 Gene

SuperPathways for C12orf29 Gene

No Data Available

Interacting Proteins for C12orf29 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000349358%0d%0a9606.ENSP00000344818%0d%0a9606.ENSP00000250495%0d%0a
Selected Interacting proteins: ENSP00000349358 for C12orf29 Gene via STRING

Gene Ontology (GO) - Biological Process for C12orf29 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002244 hematopoietic progenitor cell differentiation IEA --
genes like me logo Genes that share ontologies with C12orf29: view

No data available for Pathways by source for C12orf29 Gene

Transcripts for C12orf29 Gene

mRNA/cDNA for C12orf29 Gene

(1) REFSEQ mRNAs :
(11) Additional mRNA sequences :
(10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C12orf29 Gene

Chromosome 12 open reading frame 29:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C12orf29 Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3 ^ 4 ^ 5 ^ 6a · 6b · 6c · 6d ^ 7 ^ 8a · 8b ^ 9
SP1: - - -
SP2: - -
SP3: - - - - -
SP4: -
SP5:
SP6: - -

Relevant External Links for C12orf29 Gene

GeneLoc Exon Structure for
C12orf29
ECgene alternative splicing isoforms for
C12orf29

Expression for C12orf29 Gene

mRNA expression in normal human tissues for C12orf29 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C12orf29 Gene

SOURCE GeneReport for Unigene cluster for C12orf29 Gene Hs.591009

genes like me logo Genes that share expressions with C12orf29: view

Orthologs for C12orf29 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C12orf29 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C12H12orf29 36
  • 99.38 (n)
  • 99.38 (a)
C12orf29 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C5H12orf29 36
  • 89.54 (n)
  • 88.92 (a)
C5H12orf29 37
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C12orf29 37
  • 91 (a)
OneToOne
C15H12orf29 36
  • 91.69 (n)
  • 91.38 (a)
mouse
(Mus musculus)
Mammalia 4930430F08Rik 36
  • 85.44 (n)
  • 84.31 (a)
4930430F08Rik 16
4930430F08Rik 37
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C12orf29 37
  • 87 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C12orf29 37
  • 79 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1307947 36
  • 85.74 (n)
  • 83.69 (a)
chicken
(Gallus gallus)
Aves C12ORF29 36
  • 76.99 (n)
  • 75.85 (a)
C12orf29 37
  • 76 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C12orf29 37
  • 69 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii C25H12orf29 37
  • 60 (a)
OneToOne
zgc:103499 36
  • 62.14 (n)
  • 60.49 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.5404 37
  • 44 (a)
OneToOne
Species with no ortholog for C12orf29:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C12orf29 Gene

ENSEMBL:
Gene Tree for C12orf29 (if available)
TreeFam:
Gene Tree for C12orf29 (if available)

Paralogs for C12orf29 Gene

Pseudogenes.org Pseudogenes for C12orf29 Gene

genes like me logo Genes that share paralogs with C12orf29: view

No data available for Paralogs for C12orf29 Gene

Variants for C12orf29 Gene

Sequence variations from dbSNP and Humsavar for C12orf29 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs9262 - 88,046,899(-) GGACA(C/G)GAGAT missense, reference
rs2730487 -- 88,041,768(-) TCTGT(A/G)CTACT intron-variant
rs2731641 -- 88,036,689(-) CAGCA(A/C)TAGAA intron-variant
rs2731642 -- 88,046,295(+) TATAT(A/G)GAGAT intron-variant
rs4132799 -- 88,045,017(-) TCATA(G/T)TTCTA intron-variant

Relevant External Links for C12orf29 Gene

HapMap Linkage Disequilibrium report
C12orf29

No data available for Structural Variations from Database of Genomic Variants (DGV) for C12orf29 Gene

Disorders for C12orf29 Gene

No disorders were found for C12orf29 Gene.

No data available for UniProtKB/Swiss-Prot for C12orf29 Gene

Publications for C12orf29 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 2 3 4
  2. From ORFeome to biology: a functional genomics pipeline. (PMID: 15489336) Wiemann S. … Poustka A. (Genome Res. 2004) 3
  3. The LIFEdb database in 2006. (PMID: 16381901) Mehrle A. … Wiemann S. (Nucleic Acids Res. 2006) 3
  4. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PMID: 21139048) Danielsen J.M. … Nielsen M.L. (Mol. Cell Proteomics 2011) 3
  5. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PMID: 21890473) Wagner S.A. … Choudhary C. (Mol. Cell Proteomics 2011) 3

Products for C12orf29 Gene

Sources for C12orf29 Gene

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