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Aliases for C11orf97 Gene

Aliases for C11orf97 Gene

  • Chromosome 11 Open Reading Frame 97 2 3 5
  • Long Intergenic Non-Protein Coding RNA 1171 2 3
  • Uncharacterized Protein LOC643037 3
  • LINC01171 3

External Ids for C11orf97 Gene

Previous HGNC Symbols for C11orf97 Gene

  • LINC01171

Previous GeneCards Identifiers for C11orf97 Gene

  • GC11P094246

Summaries for C11orf97 Gene

GeneCards Summary for C11orf97 Gene

C11orf97 (Chromosome 11 Open Reading Frame 97) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C11orf97 Gene

Genomics for C11orf97 Gene

Regulatory Elements for C11orf97 Gene

Enhancers for C11orf97 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G094513 0.8 ENCODE 0.7 +0.7 697 0.9 HDAC1 PKNOX1 MXI1 ZFP64 ARID4B MAX CEBPG ZIC2 ZBTB40 HBP1 C11orf97 PIWIL4 FUT4
GH11G094512 0.7 ENCODE 0.7 +0.0 18 0.2 HDAC1 MXI1 SAP130 ZFP64 SIN3A ARID4B BMI1 ZIC2 HBP1 ZBTB20 C11orf97 PIWIL4 FUT4
GH11G094533 1.1 Ensembl ENCODE dbSUPER 0.3 +21.9 21867 1.1 STAT1 NFIB CEBPG ATF2 ZNF589 NFIC ATF3 STAT2 TRIM24 MRE11 ANKRD49 ENSG00000255893 FUT4 PIWIL4 C11orf97
GH11G094526 0.8 Ensembl dbSUPER 0.4 +14.3 14269 0.6 IRF9 PKNOX1 PBX2 CEBPB ZNF394 CEBPG ANKRD49 C11orf97 PIWIL4 FUT4
GH11G094539 0.9 ENCODE dbSUPER 0.3 +27.3 27263 1.1 MTA2 ZBED1 NR2F1 JUNB BMI1 DPF2 KLF4 GABPA NR2F2 CBX5 MRE11 ANKRD49 ENSG00000255893 PANX1 FUT4 PIWIL4 C11orf97
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C11orf97 on UCSC Golden Path with GeneCards custom track

Promoters for C11orf97 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000043463 -31 800 HDAC1 PKNOX1 MXI1 SAP130 ZFP64 SIN3A ARID4B BMI1 ZIC2 HBP1

Genomic Location for C11orf97 Gene

Chromosome:
11
Start:
94,512,432 bp from pter
End:
94,532,123 bp from pter
Size:
19,692 bases
Orientation:
Plus strand

Genomic View for C11orf97 Gene

Genes around C11orf97 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C11orf97 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C11orf97 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C11orf97 Gene

Proteins for C11orf97 Gene

  • Protein details for C11orf97 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GVM6
    Recommended name:
    Chromosome 11 open reading frame 97
    Protein Accession:
    A0A1B0GVM6

    Protein attributes for C11orf97 Gene

    Size:
    126 amino acids
    Molecular mass:
    13914 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C11orf97 Gene

Post-translational modifications for C11orf97 Gene

No Post-translational modifications

Other Protein References for C11orf97 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C11orf97 Gene

Domains & Families for C11orf97 Gene

Protein Domains for C11orf97 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C11orf97: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C11orf97 Gene

Function for C11orf97 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C11orf97 Gene

Localization for C11orf97 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C11orf97 Gene

Pathways & Interactions for C11orf97 Gene

SuperPathways for C11orf97 Gene

No Data Available

Interacting Proteins for C11orf97 Gene

Gene Ontology (GO) - Biological Process for C11orf97 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C11orf97 Gene

Drugs & Compounds for C11orf97 Gene

No Compound Related Data Available

Transcripts for C11orf97 Gene

mRNA/cDNA for C11orf97 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C11orf97 Gene

No ASD Table

Relevant External Links for C11orf97 Gene

GeneLoc Exon Structure for
C11orf97
ECgene alternative splicing isoforms for
C11orf97

Expression for C11orf97 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C11orf97 Gene

mRNA differential expression in normal tissues according to GTEx for C11orf97 Gene

This gene is overexpressed in Testis (x13.8) and Brain - Nucleus accumbens (basal ganglia) (x8.1).

NURSA nuclear receptor signaling pathways regulating expression of C11orf97 Gene:

C11orf97
genes like me logo Genes that share expression patterns with C11orf97: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C11orf97 Gene

Orthologs for C11orf97 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C11orf97 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC737876 34
  • 98.15 (n)
cow
(Bos Taurus)
Mammalia MGC137061 34
  • 82.26 (n)
mouse
(Mus musculus)
Mammalia 1700012B09Rik 34 16
  • 80.43 (n)
rat
(Rattus norvegicus)
Mammalia RGD1561795 34
  • 76.61 (n)
chicken
(Gallus gallus)
Aves LOC101751913 34
  • 71 (n)
Species where no ortholog for C11orf97 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C11orf97 Gene

ENSEMBL:
Gene Tree for C11orf97 (if available)
TreeFam:
Gene Tree for C11orf97 (if available)

Paralogs for C11orf97 Gene

No data available for Paralogs for C11orf97 Gene

Variants for C11orf97 Gene

Sequence variations from dbSNP and Humsavar for C11orf97 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000189993 -- 94,529,089(+) TTTAC(C/T)CCGGT intron-variant
rs1000284597 -- 94,529,211(+) GCCCA(C/T)GAGCT intron-variant
rs1000460869 -- 94,522,419(+) GTAGT(A/G)CCAGC intron-variant
rs1000611251 -- 94,516,690(+) TGCCA(A/T)GATAA intron-variant
rs1000623122 -- 94,526,331(+) CCCTG(A/C)ATATA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C11orf97 Gene

Variant ID Type Subtype PubMed ID
esv2671948 CNV deletion 23128226
esv993276 CNV loss 20482838

Relevant External Links for C11orf97 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C11orf97

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C11orf97 Gene

Disorders for C11orf97 Gene

Relevant External Links for C11orf97

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C11orf97

No disorders were found for C11orf97 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C11orf97 Gene

Publications for C11orf97 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 64

Products for C11orf97 Gene

Sources for C11orf97 Gene

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