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Aliases for C11orf96 Gene

Aliases for C11orf96 Gene

  • Chromosome 11 Open Reading Frame 96 2 3
  • Protein Ag2 Homolog 3 4
  • AG2 3 4
  • Uncharacterized Protein C11orf96 3

External Ids for C11orf96 Gene

Summaries for C11orf96 Gene

GeneCards Summary for C11orf96 Gene

C11orf96 (Chromosome 11 Open Reading Frame 96) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C11orf96 Gene

Genomics for C11orf96 Gene

Genomic Location for C11orf96 Gene

Start:
43,925,342 bp from pter
End:
43,944,338 bp from pter
Size:
18,997 bases
Orientation:
Plus strand

Genomic View for C11orf96 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C11orf96 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C11orf96 Gene

No data available for Regulatory Elements for C11orf96 Gene

Proteins for C11orf96 Gene

  • Protein details for C11orf96 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7Z7L8-CK096_HUMAN
    Recommended name:
    Uncharacterized protein C11orf96
    Protein Accession:
    Q7Z7L8
    Secondary Accessions:

    Protein attributes for C11orf96 Gene

    Size:
    435 amino acids
    Molecular mass:
    46114 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C11orf96 Gene

Proteomics data for C11orf96 Gene at MOPED

Post-translational modifications for C11orf96 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C11orf96 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C11orf96 Gene

Domains for C11orf96 Gene

Protein Domains for C11orf96 Gene

ProtoNet:
genes like me logo Genes that share domains with C11orf96: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C11orf96 Gene

Function for C11orf96 Gene

miRNA for C11orf96 Gene

miRTarBase miRNAs that target C11orf96

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C11orf96 Gene

Localization for C11orf96 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C11orf96 Gene COMPARTMENTS Subcellular localization image for C11orf96 gene
Compartment Confidence
extracellular 2
cytosol 1
golgi apparatus 1
mitochondrion 1
nucleus 1
peroxisome 1

No data available for Gene Ontology (GO) - Cellular Components for C11orf96 Gene

Pathways for C11orf96 Gene

SuperPathways for C11orf96 Gene

No Data Available

Interacting Proteins for C11orf96 Gene

Gene Ontology (GO) - Biological Process for C11orf96 Gene

None

No data available for Pathways by source for C11orf96 Gene

Transcripts for C11orf96 Gene

mRNA/cDNA for C11orf96 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C11orf96 Gene

Chromosome 11 open reading frame 96:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C11orf96 Gene

No ASD Table

Relevant External Links for C11orf96 Gene

GeneLoc Exon Structure for
C11orf96
ECgene alternative splicing isoforms for
C11orf96

Expression for C11orf96 Gene

mRNA expression in normal human tissues for C11orf96 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C11orf96 Gene

SOURCE GeneReport for Unigene cluster for C11orf96 Gene Hs.530443

genes like me logo Genes that share expressions with C11orf96: view

Orthologs for C11orf96 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C11orf96 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C15H11orf96 36
  • 96.42 (n)
  • 95.04 (a)
mouse
(Mus musculus)
Mammalia Gm13889 36
  • 95.59 (n)
  • 96.69 (a)
Gm13889 16
rat
(Rattus norvegicus)
Mammalia RGD1564664 36
  • 93.66 (n)
  • 96.69 (a)
chicken
(Gallus gallus)
Aves C5H11ORF96 36
  • 85.28 (n)
  • 85.83 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100495977 36
  • 73.94 (n)
  • 69.09 (a)
zebrafish
(Danio rerio)
Actinopterygii C25H11orf96 37
  • 54 (a)
OneToOne
LOC100330987 36
  • 63.37 (n)
  • 69.23 (a)
Species with no ortholog for C11orf96:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C11orf96 Gene

ENSEMBL:
Gene Tree for C11orf96 (if available)
TreeFam:
Gene Tree for C11orf96 (if available)

Paralogs for C11orf96 Gene

No data available for Paralogs for C11orf96 Gene

Variants for C11orf96 Gene

Sequence variations from dbSNP and Humsavar for C11orf96 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs7077 -- 43,943,292(+) CGGGG(C/G)GGACG utr-variant-3-prime
rs7524 -- 43,943,348(-) GGCGC(A/G)GGCAC utr-variant-3-prime
rs9846 -- 43,943,458(-) CGGGC(A/C/G/T)AGGGC utr-variant-3-prime
rs2434483 - 43,943,019(-) CTTGG(A/G)CAGCT reference, missense
rs2434486 -- 43,942,104(+) GGTGG(C/T)AAGGA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C11orf96 Gene

Variant ID Type Subtype PubMed ID
nsv832138 CNV Gain 17160897

Relevant External Links for C11orf96 Gene

HapMap Linkage Disequilibrium report
C11orf96

Disorders for C11orf96 Gene

Relevant External Links for C11orf96

Genetic Association Database (GAD)
C11orf96
genes like me logo Genes that share disorders with C11orf96: view

No data available for UniProtKB/Swiss-Prot for C11orf96 Gene

Publications for C11orf96 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  3. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor T.D. … Sakaki Y. (Nature 2006) 4
  4. System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PMID: 21406692) Rigbolt K.T. … Blagoev B. (Sci. Signal. 2011) 4
  5. An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome. (PMID: 24275569) Bian Y. … Zou H. (J. Proteomics 2014) 4

Products for C11orf96 Gene

Sources for C11orf96 Gene

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