Free for academic non-profit institutions. Other users need a Commercial license

Aliases for C11orf87 Gene

Aliases for C11orf87 Gene

  • Chromosome 11 Open Reading Frame 87 2 3 5
  • Neuronal Integral Membrane Protein 1 2 3
  • LOH11CR1A 3
  • NEURIM1 3

External Ids for C11orf87 Gene

Previous GeneCards Identifiers for C11orf87 Gene

  • GC11P108799
  • GC11P109292
  • GC11P105218

Summaries for C11orf87 Gene

GeneCards Summary for C11orf87 Gene

C11orf87 (Chromosome 11 Open Reading Frame 87) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C11orf87 Gene

Genomics for C11orf87 Gene

Regulatory Elements for C11orf87 Gene

Promoters for C11orf87 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around C11orf87 on UCSC Golden Path with GeneCards custom track

Genomic Location for C11orf87 Gene

Chromosome:
11
Start:
109,421,728 bp from pter
End:
109,429,167 bp from pter
Size:
7,440 bases
Orientation:
Plus strand

Genomic View for C11orf87 Gene

Genes around C11orf87 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C11orf87 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C11orf87 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C11orf87 Gene

Proteins for C11orf87 Gene

  • Protein details for C11orf87 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6NUJ2-CK087_HUMAN
    Recommended name:
    Uncharacterized protein C11orf87
    Protein Accession:
    Q6NUJ2
    Secondary Accessions:
    • B4E169

    Protein attributes for C11orf87 Gene

    Size:
    197 amino acids
    Molecular mass:
    20623 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C11orf87 Gene

Proteomics data for C11orf87 Gene at MOPED

Post-translational modifications for C11orf87 Gene

Other Protein References for C11orf87 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C11orf87 Gene

Domains & Families for C11orf87 Gene

Protein Domains for C11orf87 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C11orf87: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C11orf87 Gene

Function for C11orf87 Gene

genes like me logo Genes that share phenotypes with C11orf87: view

Animal Model Products

CRISPR Products

miRNA for C11orf87 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C11orf87 Gene

Localization for C11orf87 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C11orf87 Gene

Membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C11orf87 Gene COMPARTMENTS Subcellular localization image for C11orf87 gene
Compartment Confidence
mitochondrion 2
cytosol 1
extracellular 1
lysosome 1
nucleus 1
plasma membrane 1
vacuole 1

No data available for Gene Ontology (GO) - Cellular Components for C11orf87 Gene

Pathways & Interactions for C11orf87 Gene

SuperPathways for C11orf87 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C11orf87 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C11orf87 Gene

Drugs & Compounds for C11orf87 Gene

No Compound Related Data Available

Transcripts for C11orf87 Gene

mRNA/cDNA for C11orf87 Gene

Unigene Clusters for C11orf87 Gene

Chromosome 11 open reading frame 87:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C11orf87 Gene

No ASD Table

Relevant External Links for C11orf87 Gene

GeneLoc Exon Structure for
C11orf87
ECgene alternative splicing isoforms for
C11orf87

Expression for C11orf87 Gene

mRNA expression in normal human tissues for C11orf87 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C11orf87 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x10.6), Brain - Anterior cingulate cortex (BA24) (x8.9), and Brain - Cortex (x8.9).

SOURCE GeneReport for Unigene cluster for C11orf87 Gene Hs.172982

genes like me logo Genes that share expression patterns with C11orf87: view

Primer Products

In Situ Assay Products

No data available for Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for C11orf87 Gene

Orthologs for C11orf87 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C11orf87 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia LOC617737 35
  • 86.28 (n)
  • 81.25 (a)
C11orf87 36
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C5H11orf87 35
  • 91.19 (n)
  • 89.12 (a)
C11orf87 36
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia AI593442 35
  • 87.41 (n)
  • 87.24 (a)
AI593442 16
AI593442 36
  • 87 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C11H11orf87 35
  • 99.15 (n)
  • 98.98 (a)
C11orf87 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC100125362 35
  • 89.12 (n)
  • 89.29 (a)
chicken
(Gallus gallus)
Aves C1H11ORF87 35
  • 76.06 (n)
  • 71.81 (a)
C11orf87 36
  • 72 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C11orf87 36
  • 61 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii si:dkey-35i13.1 35
  • 69.38 (n)
  • 62.79 (a)
C15H11orf87 36
  • 46 (a)
OneToOne
Species with no ortholog for C11orf87:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C11orf87 Gene

ENSEMBL:
Gene Tree for C11orf87 (if available)
TreeFam:
Gene Tree for C11orf87 (if available)

Paralogs for C11orf87 Gene

No data available for Paralogs for C11orf87 Gene

Variants for C11orf87 Gene

Sequence variations from dbSNP and Humsavar for C11orf87 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs2298470 -- 109,428,302(+) CTGTT(G/T)AGTTT utr-variant-3-prime
rs2298471 -- 109,428,321(+) ATTTT(C/T)GGATA utr-variant-3-prime
rs4403771 -- 109,427,401(+) AGTAA(G/T)CCAGT utr-variant-3-prime
rs6589069 -- 109,421,758(+) TTCAT(A/C)ACCAC upstream-variant-2KB, utr-variant-5-prime
rs5794639 -- 109,421,119(+) TCTTT(-/A)AGGTA upstream-variant-2KB

Variation tolerance for C11orf87 Gene

Residual Variation Intolerance Score: 49.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.02; 20.99% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C11orf87 Gene

HapMap Linkage Disequilibrium report
C11orf87

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for C11orf87 Gene

Disorders for C11orf87 Gene

Relevant External Links for C11orf87

Genetic Association Database (GAD)
C11orf87
Human Genome Epidemiology (HuGE) Navigator
C11orf87
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C11orf87

No disorders were found for C11orf87 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C11orf87 Gene

Publications for C11orf87 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. Biological insights from 108 schizophrenia-associated genetic loci. (PMID: 25056061) (Nature 2014) 3
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  5. The protein interaction landscape of the human CMGC kinase group. (PMID: 23602568) Varjosalo M. … Gstaiger M. (Cell Rep 2013) 3

Products for C11orf87 Gene

Sources for C11orf87 Gene

Back to Top

Content