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Aliases for C11orf87 Gene

Aliases for C11orf87 Gene

  • Chromosome 11 Open Reading Frame 87 2 3
  • Neuronal Integral Membrane Protein 1 2 3
  • Uncharacterized Protein C11orf87 3
  • LOH11CR1A 3
  • NEURIM1 3

External Ids for C11orf87 Gene

Summaries for C11orf87 Gene

GeneCards Summary for C11orf87 Gene

C11orf87 (Chromosome 11 Open Reading Frame 87) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C11orf87 Gene

Genomics for C11orf87 Gene

Genomic Location for C11orf87 Gene

Start:
109,421,844 bp from pter
End:
109,429,167 bp from pter
Size:
7,324 bases
Orientation:
Plus strand

Genomic View for C11orf87 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C11orf87 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C11orf87 Gene

Regulatory Elements for C11orf87 Gene

Proteins for C11orf87 Gene

  • Protein details for C11orf87 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6NUJ2-CK087_HUMAN
    Recommended name:
    Uncharacterized protein C11orf87
    Protein Accession:
    Q6NUJ2
    Secondary Accessions:
    • B4E169

    Protein attributes for C11orf87 Gene

    Size:
    197 amino acids
    Molecular mass:
    20623 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C11orf87 Gene

Proteomics data for C11orf87 Gene at MOPED

Post-translational modifications for C11orf87 Gene

Other Protein References for C11orf87 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C11orf87 Gene

Domains for C11orf87 Gene

Protein Domains for C11orf87 Gene

ProtoNet:
genes like me logo Genes that share domains with C11orf87: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C11orf87 Gene

Function for C11orf87 Gene

Gene Ontology (GO) - Molecular Function for C11orf87 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with C11orf87: view

Phenotypes for C11orf87 Gene

GenomeRNAi human phenotypes for C11orf87:
genes like me logo Genes that share phenotypes with C11orf87: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C11orf87 Gene

Localization for C11orf87 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C11orf87 Gene

Membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C11orf87 Gene COMPARTMENTS Subcellular localization image for C11orf87 gene
Compartment Confidence
mitochondrion 2
cytosol 1
extracellular 1
lysosome 1
nucleus 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for C11orf87 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with C11orf87: view

Pathways for C11orf87 Gene

SuperPathways for C11orf87 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C11orf87 Gene

None

No data available for Pathways by source for C11orf87 Gene

Transcripts for C11orf87 Gene

mRNA/cDNA for C11orf87 Gene

Unigene Clusters for C11orf87 Gene

Chromosome 11 open reading frame 87:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C11orf87 Gene

No ASD Table

Relevant External Links for C11orf87 Gene

GeneLoc Exon Structure for
C11orf87
ECgene alternative splicing isoforms for
C11orf87

Expression for C11orf87 Gene

mRNA expression in normal human tissues for C11orf87 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C11orf87 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (10.6), Brain - Anterior cingulate cortex (BA24) (8.9), and Brain - Cortex (8.9).

SOURCE GeneReport for Unigene cluster for C11orf87 Gene Hs.172982

genes like me logo Genes that share expressions with C11orf87: view

Orthologs for C11orf87 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C11orf87 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C11H11orf87 36
  • 99.15 (n)
  • 98.98 (a)
C11orf87 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C11orf87 37
  • 85 (a)
OneToOne
LOC617737 36
  • 86.28 (n)
  • 81.25 (a)
dog
(Canis familiaris)
Mammalia C11orf87 37
  • 88 (a)
OneToOne
C5H11orf87 36
  • 91.19 (n)
  • 89.12 (a)
mouse
(Mus musculus)
Mammalia AI593442 36
  • 87.41 (n)
  • 87.24 (a)
AI593442 16
AI593442 37
  • 87 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC100125362 36
  • 89.12 (n)
  • 89.29 (a)
chicken
(Gallus gallus)
Aves C11orf87 37
  • 72 (a)
OneToOne
C1H11ORF87 36
  • 76.06 (n)
  • 71.81 (a)
lizard
(Anolis carolinensis)
Reptilia C11orf87 37
  • 61 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii C15H11orf87 37
  • 46 (a)
OneToOne
si:dkey-35i13.1 36
  • 69.38 (n)
  • 62.79 (a)
Species with no ortholog for C11orf87:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C11orf87 Gene

ENSEMBL:
Gene Tree for C11orf87 (if available)
TreeFam:
Gene Tree for C11orf87 (if available)

Paralogs for C11orf87 Gene

No data available for Paralogs for C11orf87 Gene

Variants for C11orf87 Gene

Sequence variations from dbSNP and Humsavar for C11orf87 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs2298470 -- 109,428,302(+) CTGTT(G/T)AGTTT utr-variant-3-prime
rs2298471 -- 109,428,321(+) ATTTT(C/T)GGATA utr-variant-3-prime
rs4403771 -- 109,427,401(+) AGTAA(G/T)CCAGT utr-variant-3-prime
rs5794639 -- 109,421,119(+) TCTTT(-/A)AGGTA upstream-variant-2KB
rs6589069 -- 109,421,758(+) TTCAT(A/C)ACCAC upstream-variant-2KB

Relevant External Links for C11orf87 Gene

HapMap Linkage Disequilibrium report
C11orf87

No data available for Structural Variations from Database of Genomic Variants (DGV) for C11orf87 Gene

Disorders for C11orf87 Gene

Relevant External Links for C11orf87

Genetic Association Database (GAD)
C11orf87
Human Genome Epidemiology (HuGE) Navigator
C11orf87
genes like me logo Genes that share disorders with C11orf87: view

No data available for UniProtKB/Swiss-Prot for C11orf87 Gene

Publications for C11orf87 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. The protein interaction landscape of the human CMGC kinase group. (PMID: 23602568) Varjosalo M. … Gstaiger M. (Cell Rep 2013) 3
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3

Products for C11orf87 Gene

Sources for C11orf87 Gene

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